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阐明有氧条件下微生物对一氧化二氮的还原作用:耐受、不耐受和敏感情况

Clarifying Microbial Nitrous Oxide Reduction under Aerobic Conditions: Tolerant, Intolerant, and Sensitive.

作者信息

Wang Zhiyue, Vishwanathan Nisha, Kowaliczko Sophie, Ishii Satoshi

机构信息

Department of Civil and Environmental Engineering, University of Hawai'i, Honolulu, Hawai'i, USA.

Water Resources Research Center, University of Hawai'i, Honolulu, Hawai'i, USA.

出版信息

Microbiol Spectr. 2023 Mar 16;11(2):e0470922. doi: 10.1128/spectrum.04709-22.

Abstract

One of the major challenges for the bioremediation application of microbial nitrous oxide (NO) reduction is its oxygen sensitivity. While a few strains were reported capable of reducing NO under aerobic conditions, the NO reduction kinetics of phylogenetically diverse NO reducers are not well understood. Here, we analyzed and compared the kinetics of clade I and clade II NO-reducing bacteria in the presence or absence of oxygen (O) by using a whole-cell assay with NO and O microsensors. Among the seven strains tested, NO reduction of Stutzerimonas stutzeri TR2 and ZoBell was not inhibited by oxygen (i.e., oxygen tolerant). Paracoccus denitrificans, Azospirillum brasilense, and Gemmatimonas aurantiaca reduced NO in the presence of O but slower than in the absence of O (i.e., oxygen sensitive). NO reduction of Pseudomonas aeruginosa and Dechloromonas aromatica did not occur when O was present (i.e., oxygen intolerant). Amino acid sequences and predicted structures of NosZ were highly similar among these strains, whereas oxygen-tolerant NO reducers had higher oxygen consumption rates. The results suggest that the mechanism of O tolerance is not directly related to NosZ structure but is rather related to the scavenging of O in the cells and/or accessory proteins encoded by the cluster. Some bacteria can reduce NO in the presence of O, whereas others cannot. It is unclear whether this trait of aerobic NO reduction is related to the phylogeny and structure of NO reductase. The understanding of aerobic NO reduction is critical for guiding emission control, due to the common concurrence of NO and O in natural and engineered systems. This study provided the NO reduction kinetics of various bacteria under aerobic and anaerobic conditions and classified the bacteria into oxygen-tolerant, -sensitive, and -intolerant NO reducers. Oxygen-tolerant NO reducers rapidly consumed O, which could help maintain the low O concentration in the cells and keep their NO reductase active. These findings are important and useful when selecting NO reducers for bioremediation applications.

摘要

微生物还原一氧化二氮(N₂O)用于生物修复面临的主要挑战之一是其对氧气的敏感性。虽然有报道称少数菌株能够在有氧条件下还原N₂O,但对于系统发育多样的N₂O还原菌的N₂O还原动力学还了解甚少。在此,我们通过使用带有N₂O和O₂微传感器的全细胞分析方法,分析并比较了I类和II类N₂O还原菌在有氧或无氧条件下的动力学。在所测试的7个菌株中,施氏假单胞菌TR2和佐贝尔氏菌的N₂O还原不受氧气抑制(即耐氧)。反硝化副球菌、巴西固氮螺菌和橙色芽单胞菌在有氧条件下能还原N₂O,但比无氧条件下慢(即对氧敏感)。当有氧存在时,铜绿假单胞菌和芳香脱氯单胞菌不发生N₂O还原(即不耐氧)。这些菌株中一氧化二氮还原酶(NosZ)的氨基酸序列和预测结构高度相似,而耐氧的N₂O还原菌具有更高的耗氧率。结果表明,耐氧机制与NosZ结构没有直接关系,而是与细胞内O₂的清除和/或该簇编码的辅助蛋白有关。一些细菌可以在有氧条件下还原N₂O,而另一些则不能。目前尚不清楚这种好氧N₂O还原特性是否与N₂O还原酶的系统发育和结构有关。由于在自然和工程系统中N₂O和O₂经常同时存在,了解好氧N₂O还原对于指导排放控制至关重要。本研究提供了各种细菌在好氧和厌氧条件下的N₂O还原动力学,并将这些细菌分为耐氧、对氧敏感和不耐氧的N₂O还原菌。耐氧的N₂O还原菌能迅速消耗O₂,这有助于维持细胞内低O₂浓度并保持其N₂O还原酶活性。这些发现对于为生物修复应用选择N₂O还原菌具有重要意义和实用价值。

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