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基于药代动力学和分子动力学模拟的方法,鉴定 (L.)Urb. 对抗 的止泻潜力。

Pharmacoinformatics and molecular dynamics simulation approach to identify anti-diarrheal potentials of (L.) Urb. against .

机构信息

Department of Genetic Engineering and Biotechnology, Faculty of Biological Sciences, University of Chittagong, Chattogram, Bangladesh.

Bioinformatics Division, National Institute of Biotechnology, Dhaka, Bangladesh.

出版信息

J Biomol Struct Dyn. 2023;41(24):14730-14743. doi: 10.1080/07391102.2023.2191736. Epub 2023 Mar 16.

Abstract

, the etiological agent of cholera, causes dehydration and severe diarrhea with the production of cholera toxin. Due to the acquired antibiotic resistance, has drawn attention to the establishment of novel medications to counteract the virulence and viability of the pathogen. is a medicinal herb native to Bangladesh that has a wide range of medicinal and ethnobotanical applications including anti-bacterial properties. In the present investigation, a total of 25 bioactive phytochemicals of have been screened virtually through molecular docking, ADMET (Absorption, Distribution, Metabolism, Excretion, and Toxicity) analyses, and molecular dynamics simulation. Our results revealed four lead compounds as Viridiflorol (-8.7 Kcal/mol), Luteolin (-8.1 Kcal/mol), Quercetin (-8.0 Kcal/mol) and, Geranyl acetate (-7.1 Kcal/mol) against Toxin co-regulated pilus virulence regulatory protein (ToxT). All the lead compounds have been found to possess favorable pharmacokinetic, pharmacodynamics, and molecular dynamics properties. Toxicity analysis revealed satisfactory results with no major side effects. Molecular dynamics simulation was performed for 100 ns that revealed noteworthy conformational stability and structural compactness for all the lead compounds, especially for Quercetin. Target class prediction unveiled enzymes in most of the cases and some experimental and investigational drugs were found as structurally similar analogs of the lead compounds. These findings could aid in the development of novel therapeutics targeting Cholera disease and we strongly recommend trials of our experimental findings.Communicated by Ramaswamy H. Sarma.

摘要

霍乱弧菌是霍乱的病原体,它会产生霍乱毒素,导致脱水和严重腹泻。由于抗生素的获得性耐药性,人们开始关注建立新的药物来对抗病原体的毒力和活力。 是一种原产于孟加拉国的草药,具有广泛的药用和民族植物学应用,包括抗菌特性。在本研究中,通过分子对接、ADMET(吸收、分布、代谢、排泄和毒性)分析和分子动力学模拟,对 的 25 种生物活性植物化学成分进行了虚拟筛选。我们的结果显示,有 4 种先导化合物(Viridiflorol-8.7 Kcal/mol、Luteolin-8.1 Kcal/mol、Quercetin-8.0 Kcal/mol 和,Geranyl acetate-7.1 Kcal/mol)可对抗 霍乱毒素协同调节菌毛毒力调节蛋白(ToxT)。所有的先导化合物都具有良好的药代动力学、药效学和分子动力学特性。毒性分析显示结果令人满意,没有明显的副作用。分子动力学模拟进行了 100 ns,结果显示所有先导化合物都具有显著的构象稳定性和结构紧凑性,特别是 Quercetin。靶类预测揭示了大多数情况下的酶,并且发现一些实验和研究药物是先导化合物的结构类似物。这些发现可以帮助开发针对霍乱病的新型治疗方法,我们强烈建议对我们的实验结果进行试验。由 Ramaswamy H. Sarma 传达。

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