Molecular Biology and Microbial Food Safety, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands.
FEMS Microbiol Rev. 2023 Mar 10;47(2). doi: 10.1093/femsre/fuad012.
The human gut harbors native microbial communities, forming a highly complex ecosystem. Synthetic microbial communities (SynComs) of the human gut are an assembly of microorganisms isolated from human mucosa or fecal samples. In recent decades, the ever-expanding culturing capacity and affordable sequencing, together with advanced computational modeling, started a ''golden age'' for harnessing the beneficial potential of SynComs to fight gastrointestinal disorders, such as infections and chronic inflammatory bowel diseases. As simplified and completely defined microbiota, SynComs offer a promising reductionist approach to understanding the multispecies and multikingdom interactions in the microbe-host-immune axis. However, there are still many challenges to overcome before we can precisely construct SynComs of designed function and efficacy that allow the translation of scientific findings to patients' treatments. Here, we discussed the strategies used to design, assemble, and test a SynCom, and address the significant challenges, which are of microbiological, engineering, and translational nature, that stand in the way of using SynComs as live bacterial therapeutics.
人类肠道中栖息着本土微生物群落,形成了一个高度复杂的生态系统。合成微生物群落(SynComs)是从人类黏膜或粪便样本中分离出来的微生物的集合。在过去几十年中,不断扩展的培养能力和可负担得起的测序技术,以及先进的计算建模,为利用 SynComs 的有益潜力来对抗胃肠道疾病(如感染和慢性炎症性肠病)开辟了一个“黄金时代”。作为简化和完全定义的微生物群,SynComs 为理解微生物-宿主-免疫轴中的多物种和多领域相互作用提供了一种有前途的简化方法。然而,在我们能够精确构建具有设计功能和疗效的 SynComs 之前,还有许多挑战需要克服,才能将科学发现转化为患者的治疗方法。在这里,我们讨论了用于设计、组装和测试 SynCom 的策略,并解决了在将 SynComs 用作活菌治疗剂方面存在的具有微生物学、工程学和转化性质的重大挑战。
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