Li Xiang, Wang Hongkuan, Wang Ying, Zhang Limin, Wang Yingxiang
State Key Laboratory of Genetic Engineering and Ministry of Education Key Laboratory of Biodiversity Sciences and Ecological Engineering, Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, China.
Chinese Academy of Sciences (CAS) Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, CAS, Wuhan, China.
Phenomics. 2021 May 11;1(2):73-89. doi: 10.1007/s43657-021-00012-3. eCollection 2021 Apr.
With the rapid development of omics technologies during the last several decades, genomics, transcriptomics, and proteomics have been extensively used to characterize gene or protein functions in many organisms at the cell or tissue level. However, metabolomics has not been conducted in reproductive organs, with a focus on meiosis in plants. In this study, we adopted a nuclear magnetic resonance (NMR)-based metabolomics approach to reveal the metabolic profile of inflorescences from two accessions, Columbia (Col) and Landsberg (L), and several sterile mutants caused by meiosis defects. We identified 68 dominant metabolites in the samples. Col and L displayed distinct metabolite profiles. Interestingly, mutants with similar meiotic defects, such as , and exhibited similar alterations in metabolites, including upregulation of energy metabolites and promotion of compounds related to maintenance of genomic stability, cytoplasmic homeostasis, and membrane integrity. The collective data reveal distinct changes in metabolites in inflorescences between the Col and L wild type accessions. NMR-based metabolomics could be an effective tool for molecular phenotyping in studies of aspects of plant reproductive development such as meiosis.
The online version contains supplementary material available at 10.1007/s43657-021-00012-3.
在过去几十年间,随着组学技术的迅速发展,基因组学、转录组学和蛋白质组学已被广泛用于在细胞或组织水平上表征许多生物体中的基因或蛋白质功能。然而,尚未在生殖器官中开展代谢组学研究,尤其是针对植物减数分裂的研究。在本研究中,我们采用基于核磁共振(NMR)的代谢组学方法,以揭示来自两个品系,即哥伦比亚(Col)和兰茨贝格(L),以及几个由减数分裂缺陷导致的不育突变体的花序的代谢谱。我们在样本中鉴定出68种主要代谢物。Col和L表现出不同的代谢物谱。有趣的是,具有相似减数分裂缺陷的突变体,如 、 和 ,在代谢物方面表现出相似的变化,包括能量代谢物上调以及与维持基因组稳定性、细胞质稳态和膜完整性相关的化合物增加。汇总数据揭示了Col和L野生型品系的花序中代谢物的明显变化。基于NMR的代谢组学可能是植物生殖发育(如减数分裂)研究中分子表型分析的有效工具。
在线版本包含可在10.1007/s43657-021-00012-3获取的补充材料。