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激光显微切割:一种从任何植物物种中分离特定细胞类型以进行下游分子分析的高精度方法。

Laser Microdissection: A High-Precision Approach to Isolate Specific Cell Types from Any Plant Species for Downstream Molecular Analyses.

作者信息

Tadeo Francisco R, Agustí Javier, Merelo Paz, Talón Manuel

机构信息

Centro de Genómica, Instituto Valenciano de Investigaciones Agrarias, Moncada, Valencia, Spain.

Instituto de Biología Molecular y Celular de Plantas, Universidad Politécnica de Valencia-Consejo Superior de Investigaciones Científicas, Valencia, Spain.

出版信息

Methods Mol Biol. 2023;2642:365-373. doi: 10.1007/978-1-0716-3044-0_19.

DOI:10.1007/978-1-0716-3044-0_19
PMID:36944888
Abstract

Plants display a great diversity of particular cell types that obviously perform functions and regulations that are essential for successful growth and development, whether under optimal or adverse conditions. The functions performed by each of these particular cell types must be associated with specific transcriptomic, proteomic, and metabolic profiles that cannot be disentangled by analyzing whole plant organs and tissues. Laser microdissection is a technique for the collection of specific cell types in plant organs and tissues comprising heterogeneous cell populations. It has been successfully used for physiological and molecular studies. Laser microdissection can be applied to any plant species as long as it is possible to reliably identify the cell types of interest. Here, we describe step by step, using citrus as a model plant, a fast, simple, easy to perform, and experimentally validated protocol to collect cells from the abscission zone, a specific tissue that is difficult to access and whose activity is important in the response of plants to adverse environmental conditions.

摘要

植物表现出多种多样的特定细胞类型,无论在最佳条件还是不利条件下,这些细胞类型显然都执行着对成功生长和发育至关重要的功能和调节作用。这些特定细胞类型各自执行的功能必定与特定的转录组、蛋白质组和代谢谱相关联,而通过分析整个植物器官和组织是无法理清这些关联的。激光显微切割是一种用于从包含异质细胞群体的植物器官和组织中收集特定细胞类型的技术。它已成功用于生理学和分子研究。只要能够可靠地识别出感兴趣的细胞类型,激光显微切割就可以应用于任何植物物种。在此,我们以柑橘作为模式植物,逐步描述一种快速、简单、易于操作且经过实验验证的方案,用于从脱落区收集细胞,脱落区是一种难以获取的特定组织,其活性在植物对不利环境条件的响应中很重要。

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本文引用的文献

1
Cross-Site Comparisons of Dryland Ecosystem Response to Climate Change in the US Long-Term Ecological Research Network.美国长期生态研究网络中旱地生态系统对气候变化响应的跨站点比较。
Bioscience. 2022 Aug 16;72(9):889-907. doi: 10.1093/biosci/biab134. eCollection 2022 Sep.
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Abiotic stress responses in plants.植物中的非生物胁迫响应
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Connections between abscission, dehiscence, pathogen defense, drought tolerance, and senescence.离区、裂果、抗病防御、耐旱性和衰老之间的联系。
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Cell Wall Remodeling in Abscission Zone Cells during Ethylene-Promoted Fruit Abscission in Citrus.柑橘中乙烯促进果实脱落期间离层细胞的细胞壁重塑
Front Plant Sci. 2017 Feb 8;8:126. doi: 10.3389/fpls.2017.00126. eCollection 2017.
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Comparative transcriptome analysis of stylar canal cells identifies novel candidate genes implicated in the self-incompatibility response of Citrus clementina.花柱道细胞的比较转录组分析鉴定出参与柑橘 Clementina 自交不亲和反应的新候选基因。
BMC Plant Biol. 2012 Feb 14;12:20. doi: 10.1186/1471-2229-12-20.
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Tissue-specific transcriptome profiling of the citrus fruit epidermis and subepidermis using laser capture microdissection.利用激光捕获显微切割技术对柑橘果皮和表皮组织进行组织特异性转录组分析。
J Exp Bot. 2010 Jul;61(12):3321-30. doi: 10.1093/jxb/erq153. Epub 2010 Jun 2.
8
Comparative transcriptional survey between laser-microdissected cells from laminar abscission zone and petiolar cortical tissue during ethylene-promoted abscission in citrus leaves.柑橘叶片在乙烯促进脱落过程中,来自离层脱落区和叶柄皮层组织的激光显微切割细胞之间的转录比较研究。
BMC Plant Biol. 2009 Oct 23;9:127. doi: 10.1186/1471-2229-9-127.
9
Convergent energy and stress signaling.趋同的能量与应激信号传导
Trends Plant Sci. 2008 Sep;13(9):474-82. doi: 10.1016/j.tplants.2008.06.006. Epub 2008 Aug 11.
10
A genome-wide 20 K citrus microarray for gene expression analysis.用于基因表达分析的全基因组20K柑橘微阵列。
BMC Genomics. 2008 Jul 3;9:318. doi: 10.1186/1471-2164-9-318.