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生物合成基因簇的染色体组织表明粘细菌特殊代谢具有可塑性,包括对9个新物种的描述:新物种1、新物种2、新物种3、新物种4、新物种5、新物种6、新物种7、新物种8、新物种9 。

Chromosomal organization of biosynthetic gene clusters suggests plasticity of myxobacterial specialized metabolism including descriptions for nine novel species: sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov., sp. nov.

作者信息

Ahearne Andrew, Phillips Kayleigh, Knehans Thomas, Hoing Miranda, Dowd Scot E, Stevens D Cole

机构信息

Department of BioMolecular Sciences, School of Pharmacy, University of Mississippi, Oxford, MS 38677, USA.

MR DNA, Molecular Research LP, Shallowater, TX 79363, USA.

出版信息

bioRxiv. 2023 Mar 8:2023.03.08.531766. doi: 10.1101/2023.03.08.531766.

Abstract

Natural products discovered from bacteria provide critically needed therapeutic leads for drug discovery, and myxobacteria are an established source for metabolites with unique chemical scaffolds and biological activities. Myxobacterial genomes accommodate an exceptional number and variety of biosynthetic gene clusters (BGCs) which encode for features involved in specialized metabolism. Continued discovery and sequencing of novel myxobacteria from the environment provides BGCs for the genome mining pipeline. Herein, we describe the collection, sequencing, and genome mining of 20 myxobacteria isolated from rhizospheric soil samples collected in North America. Nine isolates where determined to be novel species of myxobacteria including representatives from the genera , , , , , , and . Growth profiles, biochemical assays, and descriptions are provided for all proposed novel species. We assess the BGC content of all isolates and observe differences between Myxococcia and Polyangiia clusters. Utilizing complete or near complete genome sequences we compare the chromosomal organization of BGCs of related myxobacteria from various genera and suggest spatial proximity of hybrid, modular clusters contributes to the metabolic adaptability of myxobacteria.

摘要

从细菌中发现的天然产物为药物研发提供了急需的治疗先导化合物,黏细菌是具有独特化学结构和生物活性的代谢产物的既定来源。黏细菌基因组包含数量异常众多且种类多样的生物合成基因簇(BGC),这些基因簇编码参与特殊代谢的特征。从环境中持续发现和测序新型黏细菌为基因组挖掘流程提供了BGC。在此,我们描述了从北美采集的根际土壤样本中分离出的20种黏细菌的收集、测序和基因组挖掘。确定有9个分离株为黏细菌新物种,包括 、 、 、 、 、 和 属的代表。为所有提议的新物种提供了生长曲线、生化分析和描述。我们评估了所有分离株的BGC含量,并观察到黏球菌目和多囊黏菌目簇之间的差异。利用完整或近乎完整的基因组序列,我们比较了来自不同属的相关黏细菌的BGC的染色体组织,并表明杂交、模块化簇的空间邻近性有助于黏细菌的代谢适应性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ee73/10028903/efade45af0b0/nihpp-2023.03.08.531766v1-f0001.jpg

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