Babadi Zahra Khosravi, Garcia Ronald, Ebrahimipour Gholam Hossein, Risdian Chandra, Kämpfer Peter, Jarek Michael, Müller Rolf, Wink Joachim
Department of Microbiology and Microbial Biotechnology, Faculty of Life Sciences and Biotechnology, Shahid Beheshti University GC, Tehran 1983969411, Iran.
Microbial Strain Collection, Helmholtz Centre for Infection Research (HZI), Inhoffenstraße 7, 38124 Braunschweig, Germany.
Microorganisms. 2022 Jun 21;10(7):1262. doi: 10.3390/microorganisms10071262.
A novel myxobacterial strain ZKHCc1 1396 was isolated in 2017 from a soil sample collected along Chalus Road connecting Tehran and Mazandaran, Iran. It was a Gram-negative, rod-shaped bacterial strain that displayed the general features of including gliding and fruiting body formation on agar and microbial lytic activity. Strain ZKHCc1 1396 was characterized as an aerobic, mesophilic, and chemoheterotrophic bacterium resistant to many antibiotics. The major cellular fatty acids were branched-chain -C 2-OH, -C, -C, and -C. The strain showed the highest 16S rRNA gene sequence similarity to CA054A (99.67%) and CA031B (99.17%), and formed a novel branch both in the 16S rRNA gene sequence and phylogenomic tree. The genome size was 9,437,609 bp, with a DNA G + C content of 69.8 mol%. The strain had an average nucleotide identity (ANI) value lower than the species cut-off (95%), and with the digital DNA-DNA hybridization (dDDH) below the 70% threshold compared to the closest type strains. Secondary metabolite and biosynthetic gene cluster analyses revealed the strain's potential to produce novel compounds. Based on polyphasic taxonomic characterization, we propose that strain ZKHCc1 1396 represents a novel species, sp. nov. (NCCB 100659 = CIP 111634).
2017年,从伊朗德黑兰与马赞德兰省之间的查卢斯路沿线采集的土壤样本中分离出了一种新型粘细菌菌株ZKHCc1 1396。它是一种革兰氏阴性杆菌,具有在琼脂上滑动和形成子实体以及微生物裂解活性等一般特征。菌株ZKHCc1 1396被鉴定为需氧、嗜温、化能异养型细菌,对多种抗生素具有抗性。主要细胞脂肪酸为支链-C 2-OH、-C、-C和-C。该菌株与CA054A(99.67%)和CA031B(99.17%)的16S rRNA基因序列相似度最高,并在16S rRNA基因序列和系统发育基因组树中形成了一个新的分支。基因组大小为9,437,609 bp,DNA G + C含量为69.8 mol%。与最接近的模式菌株相比,该菌株的平均核苷酸同一性(ANI)值低于物种阈值(95%),数字DNA-DNA杂交(dDDH)低于70%阈值。次生代谢物和生物合成基因簇分析表明该菌株具有产生新化合物的潜力。基于多相分类学特征,我们提出菌株ZKHCc1 1396代表一个新物种,新种(NCCB 100659 = CIP 111634)。