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定义髓系肿瘤中TP53突变临床意义的新方案

Novel Scheme for Defining the Clinical Implications of TP53 Mutations in Myeloid Neoplasia.

作者信息

Bahaj Waled, Kewan Tariq, Gurnari Carmelo, Durmaz Arda, Ponvilawan Ben, Pandit Ishani, Kubota Yasuo, Ogbue Olisaemeka D, Zawit Misam, Madanat Yazan, Bat Taha, Balasubramanian Suresh K, Awada Hussein, Ahmed Ramsha, Mori Minako, Meggendorfer Manja, Haferlach Torsten, Visconte Valeria, Maciejewski Jaroslaw P

机构信息

Cleveland Clinic.

University of Texas Southwestern Medical Center.

出版信息

Res Sq. 2023 Mar 9:rs.3.rs-2656206. doi: 10.21203/rs.3.rs-2656206/v1.

Abstract

mutations ( ) occur in diverse genomic configurations. Particularly, biallelic inactivation is associated with poor overall survival in cancer. Lesions affecting only one allele might not be directly leukemogenic, questioning the presence of cryptic biallelic subclones in cases with dismal prognosis. We have collected clinical and molecular data of 7400 patients with myeloid neoplasms and applied a novel model to properly resolve the allelic configuration of and assess prognosis more precisely. Overall, were found in 1010 patients. Following the traditional criteria, 36% of cases were classified as single hits while 64% exhibited double hits genomic configuration. Using a newly developed molecular algorithm, we found that 579 (57%) patients had unequivocally biallelic, 239 (24%) likely contained biallelic, and 192 (19%) had most likely monoallelic . Such classification was further substantiated by a survival-based model built after re-categorization. Among cases traditionally considered monoallelic, the overall survival of those with probable monoallelic mutations was similar to the one of wild-type patients and was better than that of patients with a biallelic configuration. As a result, patients with certain biallelic hits, regardless of the disease subtype (AML or MDS), had a similar prognosis. Similar results were observed when the model was applied to an external cohort. These results were recapitulated by single-cell DNA studies, which unveiled the biallelic nature of previously considered monoallelic cases. Our novel approach more accurately resolves genomic configuration and uncovers genetic mosaicism for the use in the clinical setting to improve prognostic evaluation.

摘要

突变( )以多种基因组构型出现。特别是,双等位基因失活与癌症患者的总体生存率低相关。仅影响一个等位基因的病变可能不会直接致白血病,这使得人们对预后不良病例中隐匿的双等位基因亚克隆的存在产生质疑。我们收集了7400例髓系肿瘤患者的临床和分子数据,并应用一种新模型来正确解析 的等位基因构型并更精确地评估预后。总体而言,在1010例患者中发现了 。按照传统标准,36%的病例被归类为单等位基因突变,而64%表现出双等位基因基因组构型。使用新开发的分子算法,我们发现579例(57%)患者明确为双等位基因,239例(24%)可能包含双等位基因,192例(19%)最可能为单等位基因 。这种分类通过重新分类后建立的基于生存的模型得到了进一步证实。在传统上被认为是单等位基因突变的病例中,可能为单等位基因突变的患者的总体生存率与野生型患者相似,且优于双等位基因构型的患者。因此,具有某些双等位基因突变的患者,无论疾病亚型(急性髓系白血病或骨髓增生异常综合征)如何,预后相似。当该模型应用于外部队列时也观察到了类似结果。单细胞DNA研究重现了这些结果,该研究揭示了先前被认为是单等位基因突变病例的双等位基因性质。我们的新方法更准确地解析了 基因组构型,并揭示了基因镶嵌性,以用于临床环境中改善预后评估。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/247c/10029089/e88d4110958e/nihpp-rs2656206v1-f0001.jpg

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