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肉瘤融合蛋白(FUS)低复杂性结构域中的构象波动与相态

Conformational Fluctuations and Phases in Fused in Sarcoma (FUS) Low-Complexity Domain.

作者信息

Thirumalai D, Kumar Abhinaw, Chakraborty Debayan, Straub John E, Mugnai Mauro L

机构信息

Department of Chemistry, The University of Texas at Austin, Austin, TX 78712.

Department of Physics, The University of Texas at Austin, Austin, TX 78712.

出版信息

ArXiv. 2023 Jun 5:arXiv:2303.04215v2.

Abstract

The well known phenomenon of phase separation in synthetic polymers and proteins has become a major topic in biophysics because it has been invoked as a mechanism of compartment formation in cells, without the need for membranes. Most of the coacervates (or condensates) are composed of Intrinsically Disordered Proteins (IDPs) or regions that are structureless, often in interaction with RNA and DNA. One of the more intriguing IDPs is the 526-residue RNA binding protein, Fused In Sarcoma (FUS), whose monomer conformations and condensates exhibit unusual behavior that are sensitive to solution conditions. By focussing principally on the N-terminus low complexity domain (FUS-LC comprising residues 1-214) and other truncations, we rationalize the findings of solid state NMR experiments, which show that FUS-LC adopts a non-polymorphic fibril (core-1) involving residues 39-95, flanked by fuzzy coats on both the N- and C- terminal ends. An alternate structure (core-2), whose free energy is comparable to core-1, emerges only in the truncated construct (residues 110-214). Both core-1 and core-2 fibrils are stabilized by a Tyrosine ladder as well as hydrophilic interactions. The morphologies (gels, fibrils, and glass-like behavior) adopted by FUS seem to vary greatly, depending on the experimental conditions. The effect of phosphorylation is site specific and affects the stability of the fibril depending on the sites that are phosphorylated. Many of the peculiarities associated with FUS may also be shared by other IDPs, such as TDP43 and hnRNPA2. We outline a number of problems for which there is no clear molecular understanding.

摘要

合成聚合物和蛋白质中众所周知的相分离现象已成为生物物理学中的一个主要话题,因为它被认为是细胞中隔室形成的一种机制,而无需细胞膜。大多数凝聚物(或凝聚体)由内在无序蛋白质(IDP)或无结构区域组成,这些区域通常与RNA和DNA相互作用。其中一个更有趣的IDP是526个残基的RNA结合蛋白,融合肉瘤蛋白(FUS),其单体构象和凝聚体表现出对溶液条件敏感的异常行为。通过主要关注N端低复杂性结构域(FUS-LC,包含1-214位残基)和其他截短形式,我们对固态核磁共振实验的结果进行了合理化分析,这些实验表明FUS-LC采用了一种非多态性原纤维(核心-1),涉及39-95位残基,在N端和C端两侧都有模糊的外壳。另一种结构(核心-2),其自由能与核心-1相当,仅在截短构建体(110-214位残基)中出现。核心-1和核心-2原纤维都通过酪氨酸阶梯以及亲水相互作用得以稳定。FUS所采用的形态(凝胶、原纤维和玻璃状行为)似乎因实验条件而异。磷酸化的影响具有位点特异性,并根据磷酸化的位点影响原纤维的稳定性。与FUS相关的许多特性也可能为其他IDP所共有,如TDP43和hnRNPA2。我们概述了一些尚无明确分子理解的问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3c0c/10246222/5c78bcf11e91/nihpp-2303.04215v2-f0001.jpg

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