Department of Chemistry, The University of Texas at Austin, 105 E 24th Street, Stop A5300, Austin TX 78712, USA.
Department of Chemistry, Boston University, MA 022155, USA.
Sci Adv. 2023 Mar 22;9(12):eadd6921. doi: 10.1126/sciadv.add6921.
The transition from a disordered to an assembly-competent monomeric state (N*) in amyloidogenic sequences is a crucial event in the aggregation cascade. Using a well-calibrated model for intrinsically disordered proteins (IDPs), we show that the N* states, which bear considerable resemblance to the polymorphic fibril structures found in experiments, not only appear as excitations in the free energy landscapes of Aβ40 and Aβ42, but also initiate the aggregation cascade. For Aβ42, the transitions to the different N* states are in accord with Ostwald's rule of stages, with the least stable structures forming ahead of thermodynamically favored ones. The Aβ40 and Aβ42 monomer landscapes exhibit different extents of local frustration, which we show have profound implications in dictating subsequent self-assembly. Using kinetic transition networks, we illustrate that the most favored dimerization routes proceed via N* states. We argue that Ostwald's rule also holds for the aggregation of fused in sarcoma and polyglutamine proteins.
在淀粉样蛋白序列中,从无序状态到组装能力单体状态(N*)的转变是聚集级联的关键事件。使用经过良好校准的无规卷曲蛋白 (IDP) 模型,我们表明,N* 状态与实验中发现的多态纤维结构非常相似,不仅出现在 Aβ40 和 Aβ42 的自由能景观中作为激发态,而且还引发了聚集级联。对于 Aβ42,向不同 N* 状态的转变符合奥斯特瓦尔德阶段规则,最不稳定的结构先于热力学有利的结构形成。Aβ40 和 Aβ42 单体景观表现出不同程度的局部挫折,我们表明这对随后的自组装有深远的影响。使用动力学跃迁网络,我们说明了最有利的二聚化途径是通过 N* 状态进行的。我们认为,奥斯特瓦尔德规则也适用于肉瘤融合和多聚谷氨酰胺蛋白的聚集。