Yadav Shalini, Shaik Sason, Dubey Kshatresh Dutta
Department of Chemistry, School of Natural Science, Shiv Nadar Institution of Eminence, NH91 Tehsil Dadri, Greater Noida, Uttar Pradesh 201314, India.
Institute of Chemistry, Edmond J. Safra Campus, Givat Ram, The Hebrew University of Jerusalem, Jerusalem 9190401 Israel.
J Phys Chem B. 2023 Apr 6;127(13):2927-2933. doi: 10.1021/acs.jpcb.3c00143. Epub 2023 Mar 23.
Cytochrome P450 (CYP450), a member of CYP450 peroxygenases, catalyzes unusual decarboxylation activity. Unlike other members of the peroxygenases family, CYP450 possesses a histidine at the 85th position, which was supposed to be the root cause of the decarboxylation activity in CYP450. This work addresses the His85 → Gln mutant paradox, where mutation of His → Gln still shows efficient decarboxylation activity in CYP450. The MD simulation of the H85Q mutant of CYP450 shows that in the absence of the histidine at the 85th position, an Asp239 plays a similar role via a well-organized water channel. Our simulation shows that such a water channel is vital for the optimal substrate positioning needed for the decarboxylation activity and is gated by the Q85-N242 residue pair. Interestingly, the MD simulation of the WT CYP450BSβ shows a closed channel that blocks access to the Glu236 (analogous residue to Asp239 in CYP450), and therefore, CYP450BSβ shows low decarboxylation activity.
细胞色素P450(CYP450)是CYP450过氧酶的成员之一,催化异常的脱羧活性。与过氧酶家族的其他成员不同,CYP450在第85位有一个组氨酸,这被认为是CYP450中脱羧活性的根本原因。这项工作解决了His85→Gln突变体的悖论,即His→Gln突变在CYP450中仍表现出高效的脱羧活性。CYP450的H85Q突变体的分子动力学模拟表明,在第85位没有组氨酸的情况下,Asp239通过一个组织良好的水通道发挥类似的作用。我们的模拟表明,这样一个水通道对于脱羧活性所需的最佳底物定位至关重要,并且由Q85-N242残基对控制。有趣的是,野生型CYP450BSβ的分子动力学模拟显示有一个封闭的通道,该通道阻止了对Glu236(CYP450中与Asp239类似的残基)的访问,因此,CYP450BSβ表现出较低的脱羧活性。