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细胞色素P450脱羧酶中协调的构象变化使得能够从可再生原料生产碳氢化合物。

Coordinated conformational changes in P450 decarboxylases enable hydrocarbons production from renewable feedstocks.

作者信息

Generoso Wesley Cardoso, Alvarenga Alana Helen Santana, Simões Isabelle Taira, Miyamoto Renan Yuji, Melo Ricardo Rodrigues de, Guilherme Ederson Paulo Xavier, Mandelli Fernanda, Santos Clelton Aparecido, Prata Rafaela, Santos Camila Ramos Dos, Colombari Felippe Mariano, Morais Mariana Abrahão Bueno, Pimentel Fernandes Rodrigo, Persinoti Gabriela Felix, Murakami Mario Tyago, Zanphorlin Leticia Maria

机构信息

Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas, SP, Brazil.

Sinochem Petróleo Brasil Ltda, Rio de Janeiro, RJ, Brazil.

出版信息

Nat Commun. 2025 Jan 22;16(1):945. doi: 10.1038/s41467-025-56256-4.

Abstract

Fatty acid peroxygenases have emerged as promising biocatalysts for hydrocarbon biosynthesis due to their ability to perform C-C scission, producing olefins - key building blocks for sustainable materials and fuels. These enzymes operate through non-canonical and complex mechanisms that yield a bifurcated chemoselectivity between hydroxylation and decarboxylation. In this study, we elucidate structural features in P450 decarboxylases that enable the catalysis of unsaturated substrates, expanding the mechanistic pathways for decarboxylation reaction. Combining X-ray crystallography, molecular dynamics simulations, and machine learning, we have identified intricate molecular rearrangements within the active site that enable the Cβ atom of the substrate to approach the heme iron, thereby promoting oleate decarboxylation. Furthermore, we demonstrate that the absence of the aromatic residue in the Phe-His-Arg triad preserves chemoselectivity for alkenes, providing a distinct perspective on the molecular determinants of decarboxylation activity. Ultimately, these findings enable the sustainable production of biohydrocarbons from industrial feedstocks.

摘要

脂肪酸过氧合酶因其能够进行碳-碳断裂,生成烯烃(可持续材料和燃料的关键组成部分),已成为用于碳氢化合物生物合成的有前景的生物催化剂。这些酶通过非经典且复杂的机制发挥作用,在羟基化和脱羧反应之间产生分支化学选择性。在本研究中,我们阐明了细胞色素P450脱羧酶中能够催化不饱和底物的结构特征,扩展了脱羧反应的机制途径。结合X射线晶体学、分子动力学模拟和机器学习,我们确定了活性位点内复杂的分子重排,使底物的Cβ原子能够接近血红素铁,从而促进油酸脱羧。此外,我们证明苯丙氨酸-组氨酸-精氨酸三联体中芳香族残基的缺失保留了对烯烃的化学选择性,为脱羧活性的分子决定因素提供了独特的视角。最终,这些发现使得能够从工业原料可持续地生产生物碳氢化合物。

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