Department of Mathematics & Statistics, University of Exeter, Exeter, United Kingdom.
Living Systems Institute, University of Exeter, Exeter, United Kingdom.
PLoS Comput Biol. 2023 Mar 24;19(3):e1010985. doi: 10.1371/journal.pcbi.1010985. eCollection 2023 Mar.
Neural mass models (NMMs) are important for helping us interpret observations of brain dynamics. They provide a means to understand data in terms of mechanisms such as synaptic interactions between excitatory and inhibitory neuronal populations. To interpret data using NMMs we need to quantitatively compare the output of NMMs with data, and thereby find parameter values for which the model can produce the observed dynamics. Mapping dynamics to NMM parameter values in this way has the potential to improve our understanding of the brain in health and disease. Though abstract, NMMs still comprise of many parameters that are difficult to constrain a priori. This makes it challenging to explore the dynamics of NMMs and elucidate regions of parameter space in which their dynamics best approximate data. Existing approaches to overcome this challenge use a combination of linearising models, constraining the values they can take and exploring restricted subspaces by fixing the values of many parameters a priori. As such, we have little knowledge of the extent to which different regions of parameter space of NMMs can yield dynamics that approximate data, how nonlinearities in models can affect parameter mapping or how best to quantify similarities between model output and data. These issues need to be addressed in order to fully understand the potential and limitations of NMMs, and to aid the development of new models of brain dynamics in the future. To begin to overcome these issues, we present a global nonlinear approach to recovering parameters of NMMs from data. We use global optimisation to explore all parameters of nonlinear NMMs simultaneously, in a minimally constrained way. We do this using multi-objective optimisation (multi-objective evolutionary algorithm, MOEA) so that multiple data features can be quantified. In particular, we use the weighted horizontal visibility graph (wHVG), which is a flexible framework for quantifying different aspects of time series, by converting them into networks. We study EEG alpha activity recorded during the eyes closed resting state from 20 healthy individuals and demonstrate that the MOEA performs favourably compared to single objective approaches. The addition of the wHVG objective allows us to better constrain the model output, which leads to the recovered parameter values being restricted to smaller regions of parameter space, thus improving the practical identifiability of the model. We then use the MOEA to study differences in the alpha rhythm observed in EEG recorded from 20 people with epilepsy. We find that a small number of parameters can explain this difference and that, counterintuitively, the mean excitatory synaptic gain parameter is reduced in people with epilepsy compared to control. In addition, we propose that the MOEA could be used to mine for the presence of pathological rhythms, and demonstrate the application of this to epileptiform spike-wave discharges.
神经质量模型(NMM)对于帮助我们解释大脑动力学的观察结果非常重要。它们提供了一种根据突触相互作用等机制来理解数据的方法,这种机制存在于兴奋性和抑制性神经元群体之间。为了使用 NMM 来解释数据,我们需要定量比较 NMM 的输出和数据,并找到模型可以产生观察到的动力学的参数值。以这种方式将动力学映射到 NMM 参数值可以提高我们对健康和疾病中大脑的理解。尽管抽象,NMM 仍然包含许多难以先验约束的参数。这使得探索 NMM 的动力学并阐明其动力学最接近数据的参数空间区域变得具有挑战性。为了克服这一挑战,现有的方法是结合线性化模型、约束它们可以取的值,并通过先验固定许多参数的值来探索受限子空间。因此,我们对 NMM 的参数空间的不同区域能够产生接近数据的动力学的程度、模型中的非线性如何影响参数映射以及如何最好地量化模型输出和数据之间的相似性知之甚少。为了充分了解 NMM 的潜力和局限性,并为未来大脑动力学的新模型的发展提供帮助,需要解决这些问题。为了开始克服这些问题,我们提出了一种从数据中恢复 NMM 参数的全局非线性方法。我们使用全局优化来同时探索非线性 NMM 的所有参数,以最小的约束方式进行探索。我们通过使用多目标优化(多目标进化算法,MOEA)来实现这一点,以便可以量化多个数据特征。特别是,我们使用加权水平可视性图(wHVG),这是一种通过将它们转换为网络来量化时间序列不同方面的灵活框架。我们研究了 20 名健康个体闭眼静息状态下记录的 EEG 阿尔法活动,并证明 MOEA 与单目标方法相比表现良好。添加 wHVG 目标可以使我们更好地约束模型输出,这导致恢复的参数值被限制在参数空间的较小区域,从而提高模型的实际可识别性。然后,我们使用 MOEA 研究了从 20 名癫痫患者记录的 EEG 中观察到的 alpha 节律的差异。我们发现,少数几个参数可以解释这种差异,而且与直觉相反,与对照组相比,癫痫患者的兴奋性突触增益参数降低。此外,我们提出 MOEA 可用于挖掘病理节律的存在,并证明其在癫痫样棘波-波放电中的应用。