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通过转录组水平探究非酒精性脂肪性肝病和肌肉减少症之间的核心基因特征和机制。

Exploration of the core gene signatures and mechanisms between NAFLD and sarcopenia through transcriptomic level.

机构信息

School of Basic Medical Sciences, Peking University, Beijing, China.

Department of Bacteriology, Capital Institute of Pediatrics, Beijing, China.

出版信息

Front Endocrinol (Lausanne). 2023 Mar 9;14:1140804. doi: 10.3389/fendo.2023.1140804. eCollection 2023.

Abstract

INTRODUCTION

The increased prevalence of non-alcoholic fatty liver disease (NAFLD) and sarcopenia among the elderly are facing a significant challenge to the world's health systems. Our study aims to identify the coexpressed genes in NAFLD and sarcopenia patients.

METHODS

We downloaded the transcriptome data of NAFLD tissue from patients, as well as muscle tissues from sarcopenia patients, from the GEO database in order to investigate the shared transcriptional regulation mechanisms between these two diseases. Then, focusing on the genes that were frequently expressed in these diseases, together with GSVA and WGCNA, we utilized a range of analysis methods to identify the main co-expressed genes in both diseases by taking intersections. We investigated these changes after learning that they mostly affected lipid metabolism and oxidative stress injury pathways.

RESULTS

By analyzing these genes and their interactions with transcription factors and proteins, we were able to identify 8 genes that share common patterns. From these 8 genes, we were possible to forecast potential future medicines. Our research raises the possibility of NAFLD and sarcopenia transcriptome regulatory pathways in aging populations.

DISCUSSION

In conclusion, a complete transcription pattern mapping was carried out in order to identify the core genes, underlying biological mechanisms, and possible therapeutic targets that regulate aging in NAFLD and sarcopenia patients. It provides novel insights and proof in favor of decreasing the increased prevalence of sarcopenia in the elderly caused by NAFLD.

摘要

简介

非酒精性脂肪性肝病(NAFLD)和老年人肌少症的患病率不断增加,这给全球卫生系统带来了巨大挑战。本研究旨在鉴定 NAFLD 和肌少症患者的共表达基因。

方法

我们从 GEO 数据库中下载了 NAFLD 患者的组织转录组数据,以及肌少症患者的肌肉组织转录组数据,以研究这两种疾病之间共享的转录调控机制。然后,我们聚焦于这些疾病中经常表达的基因,结合 GSVA 和 WGCNA,利用一系列分析方法,通过取交集来鉴定两种疾病中的主要共表达基因。我们研究了这些变化,发现它们主要影响脂质代谢和氧化应激损伤途径。

结果

通过分析这些基因及其与转录因子和蛋白质的相互作用,我们鉴定出了 8 个具有共同模式的基因。从这 8 个基因中,我们可以预测出潜在的未来药物。我们的研究提出了 NAFLD 和肌少症在衰老人群中转录组调控途径的可能性。

讨论

总之,我们进行了全面的转录模式图谱绘制,以鉴定核心基因、潜在的生物学机制和可能的治疗靶点,从而调控 NAFLD 和肌少症患者的衰老过程。这为减少由 NAFLD 引起的老年人肌少症患病率的增加提供了新的见解和证据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1b59/10033966/5cbb409eab51/fendo-14-1140804-g001.jpg

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