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接合介导的质粒转移可实现多种物种的基因改造。

Conjugation-Mediated Plasmid Transfer Enables Genetic Modification of Diverse Species.

作者信息

Phillips Elise K, Cannon Jordan A, Zhou Yue, Bonifer Kyle S, Reynolds Todd B

机构信息

Department of Microbiology, University of Tennessee at Knoxville, Knoxville, Tennessee, USA.

出版信息

Microbiol Spectr. 2023 Mar 28;11(2):e0370022. doi: 10.1128/spectrum.03700-22.

Abstract

Performing genetic manipulations in strains is often hindered by difficulty in identifying conditions appropriate for DNA uptake. This shortcoming limits our understanding of the functional diversity within this genus and the practical application of new strains. We have developed a simple method for increasing the genetic tractability of spp. through conjugation-mediated plasmid transfer via a diaminopimelic acid (DAP) auxotrophic Escherichia coli donor strain. We observe transfer into representatives of the clades , and Priestia megaterium and successfully applied this protocol to 9 out of 12 strains attempted. We utilized the BioBrick 2.0 plasmids pECE743 and pECE750, as well as the CRISPR plasmid pJOE9734.1, to generate a xylose-inducible green-fluorescent protein (GFP)-expressing conjugal vector, pEP011. The use of xylose-inducible GFP ensures ease of confirming transconjugants, which enables users to quickly rule out false positives. Additionally, our plasmid backbone offers the flexibility to be used in other contexts, including transcriptional fusions and overexpression, with only a few modifications. species are widely used to produce proteins and to understand microbial differentiation. Unfortunately, outside a few lab strains, genetic manipulation is difficult and can prevent thorough dissection of useful phenotypes. We developed a protocol that utilizes conjugation (plasmids that initiate their own transfer) to introduce plasmids into a diverse range of spp. This will facilitate a deeper study of wild isolates for both industrial and pure research uses.

摘要

在芽孢杆菌属菌株中进行基因操作常常因难以确定适合DNA摄取的条件而受阻。这一缺陷限制了我们对该属内功能多样性的理解以及新菌株的实际应用。我们开发了一种简单的方法,通过二氨基庚二酸(DAP)营养缺陷型大肠杆菌供体菌株介导的接合转移来提高芽孢杆菌属菌株的遗传可操作性。我们观察到质粒转移到了芽孢杆菌属不同进化枝的代表菌株、巨大Priestia菌中,并成功地将该方案应用于12株受试菌株中的9株。我们利用BioBrick 2.0质粒pECE743和pECE750以及CRISPR质粒pJOE9734.1,构建了一个木糖诱导型绿色荧光蛋白(GFP)表达的接合载体pEP011。使用木糖诱导型GFP可确保易于确认接合子,这使得用户能够快速排除假阳性。此外,我们的质粒骨架只需进行少量修改,就可灵活用于其他情况,包括转录融合和过表达。芽孢杆菌属物种被广泛用于生产蛋白质和理解微生物分化。不幸的是,除了少数实验室菌株外,基因操作很困难,可能会妨碍对有用表型的深入剖析。我们开发了一种方案,利用接合作用(能自行启动转移的质粒)将质粒引入多种芽孢杆菌属物种中。这将有助于对野生分离株进行更深入的研究,以用于工业和纯研究用途。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/126c/10101014/bb8407417d68/spectrum.03700-22-f001.jpg

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