Accademia Nazionale dei Lincei, via della Lungara, 00165 Rome, Italy.
Department of Biochemical Sciences, Sapienza University of Rome, P.le Aldo Moro 5, 00185 Rome, Italy.
Biomolecules. 2023 Mar 22;13(3):572. doi: 10.3390/biom13030572.
Allostery arises when a ligand-induced change in shape of a binding site of a protein is coupled to a tertiary/quaternary conformational change with a consequent modulation of functional properties. The two-state allosteric model of Monod, Wyman and Changeux [J. Mol. Biol. 1965; 12, 88-118] is an elegant and effective theory to account for protein regulation and control. Tetrameric hemoglobin (Hb), the oxygen transporter of all vertebrates, has been for decades the ideal system to test for the validity of the MWC theory. The small ligands affecting Hb's behavior (organic phosphates, protons, bicarbonate) are produced by the red blood cell during metabolism. By binding to specific sites, these messengers make Hb sensing the environment and reacting consequently. HbI and HbIV from trout and human HbA are classical cooperative models, being similar yet different. They share many fundamental features, starting with the globin fold and the quaternary assembly, and reversible cooperative O binding. Nevertheless, they differ in ligand affinity, binding of allosteric effectors, and stability of the quaternary assembly. Here, we recollect essential functional properties and correlate them to the tertiary and quaternary structures available in the protein databank to infer on the molecular basis of the evolution of oxygen transporters.
变构作用是指当配体诱导蛋白质结合位点的形状发生变化时,与三级/四级构象变化偶联,从而导致功能性质的调制。莫诺德、韦曼和钱特克斯的两态变构模型[J. Mol. Biol. 1965; 12, 88-118]是一种优雅而有效的理论,可以解释蛋白质的调节和控制。四聚体血红蛋白(Hb)是所有脊椎动物的氧气转运蛋白,几十年来一直是测试 MWC 理论有效性的理想系统。影响 Hb 行为的小分子配体(有机磷酸盐、质子、碳酸氢盐)是红细胞在代谢过程中产生的。这些信使通过与特定位点结合,使 Hb 感知环境并做出相应反应。来自鳟鱼和人 HbA 的 HbI 和 HbIV 是经典的协同模型,它们相似但又不同。它们具有许多基本特征,从球蛋白折叠和四级组装以及可逆协同 O 结合开始。然而,它们在配体亲和力、变构效应物的结合以及四级组装的稳定性方面存在差异。在这里,我们回顾了基本的功能特性,并将其与蛋白质数据库中可用的三级和四级结构相关联,以推断氧气转运蛋白进化的分子基础。