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阿克曼羊产绒性状的全基因组扫描。

Genome-Wide Scan of Wool Production Traits in Akkaraman Sheep.

机构信息

Department of Animal Science, Faculty of Agriculture, Erciyes University, 38039 Kayseri, Türkiye.

International Center for Livestock Research and Training Center, Ministry of Agriculture and Forestry, 06852 Ankara, Türkiye.

出版信息

Genes (Basel). 2023 Mar 14;14(3):713. doi: 10.3390/genes14030713.

Abstract

The objective of this study was to uncover the genetic background of wool quality, a production trait, by estimating genomic heritability and implementing GWAS in Akkaraman sheep. The wool characteristics measured included fibre diameter (FD) and staple length (SL) at the age of 8 months and yearling fibre diameter (YFD), yearling staple length (YSL) and yearling greasy fleece weight (YGFW) at 18 months of age. Animals were genotyped using the Axiom 50 K Ovine Genotyping Array. Maximum likelihood estimations of a linear mixed model (LMM) were used to estimate genomic heritability, where GWAS was conducted following a score test of each trait. Genomic heritability estimates for the traits ranged between 0.22 and 0.63, indicating that phenotypes have a moderate range of heritability. One genome- and six chromosome-wide significant SNPs were associated with the wool traits in Akkaraman lambs. Accordingly, , , , , , , , , , , , , , , , and genes as well as nine uncharacterized regions (, , , , , , , and ) were defined as plausible candidates. The findings of this study shed light on the genetics of wool quality and yield for the Akkaraman breed and suggests targets for breeders during systematic breeding programmes.

摘要

本研究旨在揭示羊毛品质(生产性状)的遗传背景,通过估计基因组遗传力并在阿卡里曼羊中实施 GWAS 来实现。所测量的羊毛特征包括 8 月龄和周岁时的纤维直径(FD)和纤维长度(SL)以及 18 月龄时的周岁纤维直径(YFD)、周岁纤维长度(YSL)和周岁含脂羊毛重量(YGFW)。动物使用 Axiom 50 K 绵羊基因分型阵列进行基因分型。使用线性混合模型(LMM)的最大似然估计来估计基因组遗传力,其中对每个性状进行评分检验后进行 GWAS。这些性状的基因组遗传力估计值在 0.22 到 0.63 之间,表明表型具有中等程度的遗传力。一个全基因组和六个染色体范围内的显著 SNP 与阿卡里曼羔羊的羊毛性状有关。相应地,、、、、、、、、、、、、、、和 基因以及九个未表征的区域(、、、、、、和 )被定义为可能的候选基因。本研究结果揭示了阿卡里曼品种的羊毛品质和产量的遗传学基础,并为系统育种计划中的育种者提供了目标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3fa/10048666/c33eecf20e16/genes-14-00713-g001.jpg

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