Department of Biosciences, Capital University of Science and Technology, Islamabad 44000, Pakistan.
Department of Pharmacology and Toxicology, College of Pharmacy, King Saud University, P.O. Box 2455, Riyadh 11451, Saudi Arabia.
Molecules. 2023 Mar 14;28(6):2635. doi: 10.3390/molecules28062635.
Over the past decade, methicillin-resistant (MRSA) has become a major source of biofilm formation and a major contributor to antimicrobial resistance. The genes that govern biofilm formation are regulated by a signaling mechanism called the quorum-sensing system. There is a need for new molecules to treat the infections caused by dangerous pathogens like MRSA. The current study focused on an alternative approach using juglone derivatives from as quorum quenchers. Ten bioactive compounds from this plant, i.e., 2-methoxy-6-acetyl-7-methyljuglone, emodin, emodin 8-o-b glucoside, polydatin, resveratrol, physcion, citreorosein, quercetin, hyperoside, and coumarin were taken as ligands and docked with accessory gene regulator proteins A, B, and C and the signal transduction protein TRAP. The best ligand was selected based on docking score, ADMET properties, and the Lipinski rule. Considering all these parameters, resveratrol displayed all required drug-like properties with a docking score of -8.9 against accessory gene regulator protein C. To further assess the effectiveness of resveratrol, it was compared with the commercially available antibiotic drug penicillin. A comparison of all drug-like characteristics showed that resveratrol was superior to penicillin in many aspects. Penicillin showed a binding affinity of -6.7 while resveratrol had a score of -8.9 during docking. This was followed by molecular dynamic simulations wherein inhibitors in complexes with target proteins showed stability inside the active site during the 100 ns simulations. Structural changes due to ligand movement inside the cavity were measured in the protein targets, but they remained static due to hydrogen bonds. The results showed acceptable pharmacokinetic properties for resveratrol as compared to penicillin. Thus, we concluded that resveratrol has protective effects against infections and that it suppresses the quorum-sensing ability of this bacterium by targeting its infectious proteins.
在过去的十年中,耐甲氧西林金黄色葡萄球菌(MRSA)已成为生物膜形成的主要来源,并成为抗微生物药物耐药性的主要因素。控制生物膜形成的基因受称为群体感应系统的信号机制调节。需要新的分子来治疗由像 MRSA 这样的危险病原体引起的感染。本研究侧重于使用来自核桃的胡桃醌衍生物作为群体感应淬灭剂的替代方法。从该植物中提取了十种生物活性化合物,即 2-甲氧基-6-乙酰-7-甲基胡桃醌、大黄素、大黄素 8-O-β-D-葡萄糖苷、虎杖苷、白藜芦醇、大黄素、大黄素、橙皮苷、槲皮素、金丝桃苷和香豆素,作为配体与辅助基因调节蛋白 A、B 和 C 以及信号转导蛋白 TRAP 对接。根据对接评分、ADMET 特性和 Lipinski 规则选择最佳配体。考虑到所有这些参数,白藜芦醇显示出所有必需的药物样特性,与辅助基因调节蛋白 C 的对接评分为-8.9。为了进一步评估白藜芦醇的有效性,将其与市售抗生素药物青霉素进行比较。对所有类药性特征的比较表明,白藜芦醇在许多方面优于青霉素。青霉素的结合亲和力为-6.7,而白藜芦醇的对接评分在-8.9 范围内。接下来是分子动力学模拟,其中抑制剂与靶蛋白的复合物在 100 ns 模拟过程中在活性位点内表现出稳定性。在蛋白质靶标中测量了由于配体在腔体内移动而导致的结构变化,但由于氢键它们保持静态。与青霉素相比,白藜芦醇具有可接受的药代动力学特性。因此,我们得出结论,白藜芦醇具有保护作用,可以抵抗感染,并且通过靶向其感染性蛋白来抑制这种细菌的群体感应能力。