Faculty of Education, Hokkaido University of Education, 5-3-1-5, Ainosato, Kita-ku, Sapporo 002-8502, Japan.
Department of Physics, Graduate School of Science, Tokyo University of Science, 1-3, Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan.
Molecules. 2023 Mar 17;28(6):2719. doi: 10.3390/molecules28062719.
This study numerically demonstrates the light absorption spectra of each base of DNA-wrapped single-walled carbon nanotubes (SWCNTs). Previous experimental and theoretical studies show that the optical properties of these composites are different from the bare SWCNTs. In this work, we investigated the bases of DNA that influence optical properties. To obtain stable molecular states for studying optical properties, molecular dynamics calculations were performed. Additionally, light absorption spectra in the ultraviolet-to-near-infrared region of one type of base-wrapped (e.g., adenine-, thymine-, cytosine-, or guanine-wrapped) SWCNTs were investigated by utilizing the semi-empirical molecular orbital theory using SCIGRESS commercial software. This method can significantly reduce the calculation time compared to the ab initio molecular orbital method, making the handling of composites of bases and SWCNTs possible. We found that the largest peaks appear at a wavelength of around 300 nm for all the composites. Furthermore, we found that the light absorption spectra above 570 nm are strongly influenced by adenine and cytosine. Thus, our computational results provide insight into the optical properties and the effects of base-SWCNTs that are difficult to investigate experimentally under the influence of solvents and various molecules.
本研究通过数值方法演示了 DNA 包裹的单壁碳纳米管(SWCNTs)中每个碱基的光吸收谱。先前的实验和理论研究表明,这些复合材料的光学性质与裸露的 SWCNTs 不同。在这项工作中,我们研究了影响光学性质的 DNA 碱基。为了获得用于研究光学性质的稳定分子状态,进行了分子动力学计算。此外,利用商业软件 SCIGRESS 的半经验分子轨道理论研究了一种碱基包裹(例如,腺嘌呤、胸腺嘧啶、胞嘧啶或鸟嘌呤包裹)SWCNTs 的紫外到近红外区域的光吸收谱。与从头算分子轨道方法相比,这种方法可以显著减少计算时间,使得碱基和 SWCNTs 复合材料的处理成为可能。我们发现,对于所有的复合材料,最大峰出现在约 300nm 的波长处。此外,我们发现,570nm 以上的光吸收谱强烈受到腺嘌呤和胞嘧啶的影响。因此,我们的计算结果为光学性质以及在溶剂和各种分子的影响下难以通过实验研究的碱基-SWCNTs 的影响提供了深入的了解。