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钝节固氮螺菌 NT-26 菌株的亚砷酸盐氧化酶与其天然电子受体细胞色素 c 形成的复合物的结构。

The structure of the complex between the arsenite oxidase from Pseudorhizobium banfieldiae sp. strain NT-26 and its native electron acceptor cytochrome c.

机构信息

School of Chemistry and The Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Australia.

Institute of Structural and Molecular Biology, Division of Biosciences, University College London, London WC1E 6BT, United Kingdom.

出版信息

Acta Crystallogr D Struct Biol. 2023 Apr 1;79(Pt 4):345-352. doi: 10.1107/S2059798323002103. Epub 2023 Mar 30.

DOI:10.1107/S2059798323002103
PMID:36995233
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10071563/
Abstract

The arsenite oxidase (AioAB) from Pseudorhizobium banfieldiae sp. strain NT-26 catalyzes the oxidation of arsenite to arsenate and transfers electrons to its cognate electron acceptor cytochrome c (cytc). This activity underpins the ability of this organism to respire using arsenite present in contaminated environments. The crystal structure of the AioAB/cytc electron transfer complex reveals two AB/(cytc) assemblies per asymmetric unit. Three of the four cytc molecules in the asymmetric unit dock to AioAB in a cleft at the interface between the AioA and AioB subunits, with an edge-to-edge distance of 7.5 Å between the heme of cytc and the [2Fe-2S] Rieske cluster in the AioB subunit. The interface between the AioAB and cytc proteins features electrostatic and nonpolar interactions and is stabilized by two salt bridges. A modest number of hydrogen bonds, salt bridges and relatively small, buried surface areas between protein partners are typical features of transient electron transfer complexes. Interestingly, the fourth cytc molecule is positioned differently between two AioAB heterodimers, with distances between its heme and the AioAB redox active cofactors that are outside the acceptable range for fast electron transfer. This unique cytc molecule appears to be positioned to facilitate crystal packing rather than reflecting a functional complex.

摘要

根瘤菌属 NT-26 菌株的亚砷酸盐氧化酶(AioAB)催化亚砷酸盐氧化为砷酸盐,并将电子转移到其同源电子受体细胞色素 c(cytc)。这种活性是该生物能够在受污染环境中利用亚砷酸盐进行呼吸的基础。AioAB/cytc 电子转移复合物的晶体结构揭示了每个不对称单位中有两个 AB/(cytc)组装体。在不对称单位中的四个 cytc 分子中的三个与 AioAB 结合在 AioA 和 AioB 亚基之间的裂隙中,cytc 的血红素与 AioB 亚基中的[2Fe-2S] Rieske 簇之间的边缘到边缘距离为 7.5 Å。AioAB 和 cytc 蛋白之间的界面具有静电和非极性相互作用,并由两个盐桥稳定。少量氢键、盐桥和蛋白伴侣之间相对较小的埋藏表面积是瞬时电子转移复合物的典型特征。有趣的是,第四个 cytc 分子在两个 AioAB 异二聚体之间的位置不同,其血红素与 AioAB 氧化还原活性辅因子之间的距离超出了快速电子转移的可接受范围。这个独特的 cytc 分子似乎是为了促进晶体包装而定位的,而不是反映功能复合物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/063c/10071563/dcc387783faa/d-79-00345-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/063c/10071563/f2166214ebce/d-79-00345-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/063c/10071563/3342d419c679/d-79-00345-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/063c/10071563/dcc387783faa/d-79-00345-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/063c/10071563/f2166214ebce/d-79-00345-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/063c/10071563/3342d419c679/d-79-00345-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/063c/10071563/dcc387783faa/d-79-00345-fig3.jpg

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本文引用的文献

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