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结构与功能表征来自链霉菌的细胞壁锚定细菌溶菌多糖单加氧酶的催化结构域。

Structural and functional characterization of the catalytic domain of a cell-wall anchored bacterial lytic polysaccharide monooxygenase from Streptomyces coelicolor.

机构信息

Faculty of Chemistry, Biotechnology, and Food Science, The Norwegian University of Life Sciences (NMBU), 1432, Ås, Norway.

INRAE, Aix Marseille University, UMR1163 Biodiversité et Biotechnologie Fongiques, 13009, Marseille, France.

出版信息

Sci Rep. 2023 Apr 1;13(1):5345. doi: 10.1038/s41598-023-32263-7.

Abstract

Bacterial lytic polysaccharide monooxygenases (LPMOs) are known to oxidize the most abundant and recalcitrant polymers in Nature, namely cellulose and chitin. The genome of the model actinomycete Streptomyces coelicolor A3(2) encodes seven putative LPMOs, of which, upon phylogenetic analysis, four group with typical chitin-oxidizing LPMOs, two with typical cellulose-active LPMOs, and one which stands out by being part of a subclade of non-characterized enzymes. The latter enzyme, called ScLPMO10D, and most of the enzymes found in this subclade are unique, not only because of variation in the catalytic domain, but also as their C-terminus contains a cell wall sorting signal (CWSS), which flags the LPMO for covalent anchoring to the cell wall. Here, we have produced a truncated version of ScLPMO10D without the CWSS and determined its crystal structure, EPR spectrum, and various functional properties. While showing several structural and functional features typical for bacterial cellulose active LPMOs, ScLPMO10D is only active on chitin. Comparison with two known chitin-oxidizing LPMOs of different taxa revealed interesting functional differences related to copper reactivity. This study contributes to our understanding of the biological roles of LPMOs and provides a foundation for structural and functional comparison of phylogenetically distant LPMOs with similar substrate specificities.

摘要

细菌裂解多糖单加氧酶(LPMOs)已知能够氧化自然界中最丰富和最难降解的聚合物,即纤维素和几丁质。模式放线菌变铅青链霉菌 A3(2)的基因组编码了七个推定的 LPMOs,其中,根据系统发育分析,有四个属于典型的几丁质氧化 LPMOs,两个属于典型的纤维素活性 LPMOs,一个属于一个未被表征的酶的亚科。后一种酶,称为 ScLPMO10D,以及该亚科中发现的大多数酶不仅因其催化结构域的变化而独特,而且它们的 C 末端含有细胞壁分选信号 (CWSS),这标志着 LPMO 与细胞壁共价结合。在这里,我们产生了一个没有 CWSS 的 ScLPMO10D 的截断版本,并确定了它的晶体结构、EPR 光谱和各种功能特性。虽然 ScLPMO10D 表现出几种与细菌纤维素活性 LPMOs 典型的结构和功能特征,但它仅对几丁质具有活性。与两个不同分类群的已知几丁质氧化 LPMOs 的比较揭示了与铜反应性相关的有趣功能差异。这项研究有助于我们理解 LPMOs 的生物学作用,并为具有相似底物特异性的系统发育上遥远的 LPMOs 的结构和功能比较提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7851/10067821/69e875d56436/41598_2023_32263_Fig1_HTML.jpg

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