Loo Jessica, Teo Kelvin Y C, Vyas Chinmayi H, Jordan-Yu Janice Marie N, Juhari Amalia B, Jaffe Glenn J, Cheung Chui Ming Gemmy, Farsiu Sina
Department of Biomedical Engineering, Duke University, Durham, North Carolina.
Singapore Eye Research Institute, Singapore National Eye Center, Singapore, Singapore.
Ophthalmol Sci. 2023 Feb 24;3(3):100292. doi: 10.1016/j.xops.2023.100292. eCollection 2023 Sep.
To develop a fully-automatic hybrid algorithm to jointly segment and quantify biomarkers of polypoidal choroidal vasculopathy (PCV) on indocyanine green angiography (ICGA) and spectral domain-OCT (SD-OCT) images.
Evaluation of diagnostic test or technology.
Seventy-two participants with PCV enrolled in clinical studies at Singapore National Eye Center.
The dataset consisted of 2-dimensional (2-D) ICGA and 3-dimensional (3-D) SD-OCT images which were spatially registered and manually segmented by clinicians. A deep learning-based hybrid algorithm called PCV-Net was developed for automatic joint segmentation of biomarkers. The PCV-Net consisted of a 2-D segmentation branch for ICGA and 3-D segmentation branch for SD-OCT. We developed fusion attention modules to connect the 2-D and 3-D branches for effective use of the spatial correspondence between the imaging modalities by sharing learned features. We also used self-supervised pretraining and ensembling to further enhance the performance of the algorithm without the need for additional datasets. We compared the proposed PCV-Net to several alternative model variants.
The PCV-Net was evaluated based on the Dice similarity coefficient (DSC) of the segmentations and the Pearson's correlation and absolute difference of the clinical measurements obtained from the segmentations. Manual grading was used as the gold standard.
The PCV-Net showed good performance compared to manual grading and alternative model variants based on both quantitative and qualitative analyses. Compared to the baseline variant, PCV-Net improved the DSC by 0.04 to 0.43 across the different biomarkers, increased the correlations, and decreased the absolute differences of clinical measurements of interest. Specifically, the largest average (mean ± standard error) DSC improvement was for intraretinal fluid, from 0.02 ± 0.00 (baseline variant) to 0.45 ± 0.06 (PCV-Net). In general, improving trends were observed across the model variants as more technical specifications were added, demonstrating the importance of each aspect of the proposed method.
The PCV-Net has the potential to aid clinicians in disease assessment and research to improve clinical understanding and management of PCV.
Proprietary or commercial disclosure may be found after the references.
开发一种全自动混合算法,用于在吲哚菁绿血管造影(ICGA)和光谱域光学相干断层扫描(SD-OCT)图像上联合分割和量化息肉状脉络膜血管病变(PCV)的生物标志物。
诊断测试或技术评估。
72名患有PCV的参与者参加了新加坡国立眼科中心的临床研究。
数据集由二维(2-D)ICGA和三维(3-D)SD-OCT图像组成,这些图像在空间上进行了配准,并由临床医生进行手动分割。开发了一种基于深度学习的混合算法PCV-Net,用于生物标志物的自动联合分割。PCV-Net由一个用于ICGA的二维分割分支和一个用于SD-OCT的三维分割分支组成。我们开发了融合注意力模块来连接二维和三维分支,通过共享学习到的特征有效利用成像模态之间的空间对应关系。我们还使用了自监督预训练和集成方法,无需额外数据集即可进一步提高算法性能。我们将提出的PCV-Net与几种替代模型变体进行了比较。
基于分割的Dice相似系数(DSC)以及从分割中获得的临床测量值的Pearson相关性和绝对差异对PCV-Net进行评估。手动分级用作金标准。
基于定量和定性分析,与手动分级和替代模型变体相比,PCV-Net表现出良好的性能。与基线变体相比,PCV-Net在不同生物标志物上的DSC提高了0.04至0.43,增加了相关性,并降低了感兴趣的临床测量值的绝对差异。具体而言,视网膜内液的最大平均(均值±标准误差)DSC改善最为显著,从0.02±0.00(基线变体)提高到0.45±0.06(PCV-Net)。总体而言,随着添加更多技术规范,在模型变体中观察到了改善趋势,这表明了所提出方法各方面的重要性。
PCV-Net有潜力帮助临床医生进行疾病评估和研究,以提高对PCV的临床理解和管理。
专有或商业披露信息可在参考文献之后找到。