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通过共振拉曼光谱法对(m5dC-dG)3的Z型热稳定性的研究。

A study of the thermal stability of the Z form of (m5dC-dG)3 by resonance Raman spectroscopy.

作者信息

Laigle A, Chinsky L, Turpin P Y, Hartmann B, Thuong N T, Leng M

出版信息

Nucleic Acids Res. 1986 Apr 25;14(8):3425-34. doi: 10.1093/nar/14.8.3425.

DOI:10.1093/nar/14.8.3425
PMID:3703678
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC339782/
Abstract

The thermal stability of the hexanucleoside pentaphosphate m5dCpdGpm5dCpdGpm5 dCpdG has been studied by resonance Raman spectroscopy with 257 nm excitation wavelength. At low temperature and in 3M NaClO4, the Raman spectrum resembles that of poly(dG-dC).poly(dG-dC) in the Z conformation. As the temperature is increased, the position and the intensity of several bands (1312 cm-1, 1482 cm-1, 1584 cm-1 and 1632 cm-1) are modified. The variation of intensity versus temperature is biphasic. Analysis of the results suggests that the increase of temperature induces first a transition from the Z form to an intermediate stable form which then melts. These results and those previously obtained by circular dichroism and 31P nuclear magnetic resonance suggest that the intermediate form belongs to the left family but with changes in the stacking of the bases and the geometry of the phosphate groups as compared to the canonical Z form.

摘要

已通过共振拉曼光谱法在257nm激发波长下研究了六核苷五磷酸m5dCpdGpm5dCpdGpm5dCpdG的热稳定性。在低温和3M高氯酸钠中,拉曼光谱类似于Z构象的聚(dG-dC).聚(dG-dC)。随着温度升高,几个谱带(1312cm -1、1482cm -1、1584cm -1和1632cm -1)的位置和强度发生改变。强度随温度的变化是双相的。结果分析表明,温度升高首先引起从Z型到中间稳定型的转变,然后中间稳定型熔化。这些结果以及先前通过圆二色性和31P核磁共振获得的结果表明,中间型属于左手家族,但与标准Z型相比,碱基堆积和磷酸基团几何结构发生了变化。

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引用本文的文献

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本文引用的文献

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Synthesis and structural studies of a self-complementary decadeoxynucleotide d(AATTGCAATT). I.-Synthesis and chemical characterization of the decanucleotide.一种自我互补的十脱氧核苷酸d(AATTGCAATT)的合成与结构研究。I. -十核苷酸的合成与化学表征。
Biochimie. 1981 Oct;63(10):775-84. doi: 10.1016/s0300-9084(81)80037-5.
2
The high salt form of poly(dG-dC).poly(dG-dC) is left-handed Z-DNA: Raman spectra of crystals and solutions.聚(dG-dC)·聚(dG-dC)的高盐形式是左手Z-DNA:晶体和溶液的拉曼光谱。
Nucleic Acids Res. 1981 Oct 24;9(20):5443-57. doi: 10.1093/nar/9.20.5443.
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Natural DNA sequences can form left-handed helices in low salt solution under conditions of topological constraint.在拓扑学限制条件下,天然DNA序列在低盐溶液中可形成左手螺旋结构。
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Molecular structure of (m5 dC-dG)3: the role of the methyl group on 5-methyl cytosine in stabilizing Z-DNA.(m5 dC-dG)3的分子结构:5-甲基胞嘧啶上的甲基在稳定Z-DNA中的作用。
Nucleic Acids Res. 1982 Dec 11;10(23):7879-92. doi: 10.1093/nar/10.23.7879.
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Z-DNA: vacuum ultraviolet circular dichroism.Z型DNA:真空紫外圆二色性
Proc Natl Acad Sci U S A. 1981 Aug;78(8):4801-4. doi: 10.1073/pnas.78.8.4801.
6
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Nucleic Acids Res. 1983 Aug 25;11(16):5747-61. doi: 10.1093/nar/11.16.5747.
7
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Biochemistry. 1983 May 10;22(10):2398-405. doi: 10.1021/bi00279a015.
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1H NMR and circular dichroism studies of the B and Z conformations of the self-complementary deoxyhexanucleotide d(m5C-G-C-G-m5-C-G): mechanism of the Z-B-coil transitions.自互补脱氧六核苷酸d(m5C-G-C-G-m5-C-G)的B和Z构象的1H核磁共振及圆二色性研究:Z-B-卷曲转变机制
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A one- and two-dimensional NMR study of the B to Z transition of (m5dC-dG)3 in methanolic solution.甲醇溶液中(m5dC-dG)3从B型到Z型转变的一维和二维核磁共振研究。
Nucleic Acids Res. 1984 Jan 25;12(2):1243-63. doi: 10.1093/nar/12.2.1243.