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The scverse project provides a computational ecosystem for single-cell omics data analysis.

作者信息

Virshup Isaac, Bredikhin Danila, Heumos Lukas, Palla Giovanni, Sturm Gregor, Gayoso Adam, Kats Ilia, Koutrouli Mikaela, Berger Bonnie, Pe'er Dana, Regev Aviv, Teichmann Sarah A, Finotello Francesca, Wolf F Alexander, Yosef Nir, Stegle Oliver, Theis Fabian J

机构信息

Computational Health Center, Helmholtz Center Munich, Neuherberg, Germany.

European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Heidelberg, Germany.

出版信息

Nat Biotechnol. 2023 May;41(5):604-606. doi: 10.1038/s41587-023-01733-8.

DOI:10.1038/s41587-023-01733-8

PMID:37037904

Abstract

摘要

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相似文献

The scverse project provides a computational ecosystem for single-cell omics data analysis.

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Cell Syst. 2024 Oct 16;15(10):893-894. doi: 10.1016/j.cels.2024.09.011.

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J Mol Cell Biol. 2019 Aug 19;11(8):631-632. doi: 10.1093/jmcb/mjz095.

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Nat Rev Nephrol. 2021 Nov;17(11):710-724. doi: 10.1038/s41581-021-00463-x. Epub 2021 Aug 20.

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本文引用的文献

How the pandemic inspired a new generation of creators.

Nature. 2022 Dec;612(7939):S3-S4. doi: 10.1038/d41586-022-04204-3.

Mapping cell types across human tissues.

Science. 2022 May 13;376(6594):695-696. doi: 10.1126/science.abq2116. Epub 2022 May 12.

A Python library for probabilistic analysis of single-cell omics data.

Nat Biotechnol. 2022 Feb;40(2):163-166. doi: 10.1038/s41587-021-01206-w.

Squidpy: a scalable framework for spatial omics analysis.

Nat Methods. 2022 Feb;19(2):171-178. doi: 10.1038/s41592-021-01358-2. Epub 2022 Jan 31.

Benchmarking atlas-level data integration in single-cell genomics.

Nat Methods. 2022 Jan;19(1):41-50. doi: 10.1038/s41592-021-01336-8. Epub 2021 Dec 23.

Building Tools for Machine Learning and Artificial Intelligence in Cancer Research: Best Practices and a Case Study with the PathML Toolkit for Computational Pathology.

Mol Cancer Res. 2022 Feb;20(2):202-206. doi: 10.1158/1541-7786.MCR-21-0665. Epub 2021 Dec 8.

OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies.

Nat Methods. 2021 Dec;18(12):1496-1498. doi: 10.1038/s41592-021-01326-w. Epub 2021 Nov 29.

Sfaira accelerates data and model reuse in single cell genomics.

Genome Biol. 2021 Aug 25;22(1):248. doi: 10.1186/s13059-021-02452-6.

Array programming with NumPy.

Nature. 2020 Sep;585(7825):357-362. doi: 10.1038/s41586-020-2649-2. Epub 2020 Sep 16.

Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data.

Bioinformatics. 2020 Sep 15;36(18):4817-4818. doi: 10.1093/bioinformatics/btaa611.

Suppr超能文献

The scverse project provides a computational ecosystem for single-cell omics data analysis.

作者信息

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出版信息

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