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在小粒咖啡早期种子发育过程中NAC转录因子家族的鉴定

Identification of the NAC Transcription Factor Family during Early Seed Development in (.) Koidz.

作者信息

Liu Huijuan, Chen Songshu, Wu Xiaomao, Li Jinling, Xu Cunbin, Huang Mingjin, Wang Hualei, Liu Hongchang, Zhao Zhi

机构信息

College of Life Sciences, Guizhou University, Guiyang 550025, China.

Guizhou Key Laboratory of Propagation and Cultivation on Medicinal Plants, Guizhou University, Guiyang 550025, China.

出版信息

Plants (Basel). 2023 Mar 31;12(7):1518. doi: 10.3390/plants12071518.

Abstract

This study aimed to gain an understanding of the possible function of NACs by examining their physicochemical properties, structure, chromosomal location, and expression. Being a family of plant-specific transcription factors, NAC (petunia no apical meristem and ATAF1, ATAF2, and CUC2) is involved in plant growth and development. None of the NAC genes has been reported in (.) Koidz (). In this study, we identified 101 NAC proteins (AktNACs) in the genome by bioinformatic analysis. One hundred one AktNACs were classified into the following twelve categories based on the phylogenetic analysis of NAC protein: NAC-a, NAC-b, NAC-c, NAC-d, NAC-e, NAC-f, NAC-g, NAC-h, NAC-i, NAC-j, NAC-k, and NAC-l. The accuracy of the clustering results was demonstrated based on the gene structure and conserved motif analysis of AktNACs. In addition, we identified 44 pairs of duplication genes, confirming the importance of purifying selection in the evolution of AktNACs. The morphology and microstructure of early seed development showed that it mainly underwent rapid cell division, seed enlargement, embryo formation and endosperm development. We constructed AktNACs co-expression network and metabolite correlation network based on transcriptomic and metabolomic data of seeds. The results of the co-expression network showed that 25 AtNAC genes were co-expressed with 233 transcription factors. Metabolite correlation analysis showed that 23 AktNACs were highly correlated with 28 upregulated metabolites. Additionally, 25 AktNACs and 235 transcription factors formed co-expression networks with 141 metabolites, based on correlation analysis involving AktNACs, transcription factors, and metabolites. Notably, participates in the synthesis of 35 distinct metabolites. Eight of these metabolites, strongly correlated with , were upregulated during early seed development. These studies may provide insight into the evolution, possible function, and expression of AktNACs genes.

摘要

本研究旨在通过研究NACs的物理化学性质、结构、染色体定位和表达,来了解其可能的功能。作为植物特异性转录因子家族,NAC(矮牵牛无顶端分生组织以及ATAF1、ATAF2和CUC2)参与植物的生长和发育。在小井(.)小井()中尚未报道过任何NAC基因。在本研究中,我们通过生物信息学分析在[物种名称]基因组中鉴定出101个NAC蛋白(AktNACs)。基于NAC蛋白的系统发育分析,101个AktNACs被分为以下十二类:NAC-a、NAC-b、NAC-c、NAC-d、NAC-e、NAC-f、NAC-g、NAC-h、NAC-i、NAC-j、NAC-k和NAC-l。基于AktNACs的基因结构和保守基序分析,证明了聚类结果的准确性。此外,我们鉴定出44对重复基因,证实了纯化选择在AktNACs进化中的重要性。[物种名称]种子早期发育的形态和微观结构表明,它主要经历快速细胞分裂、种子膨大、胚形成和胚乳发育。我们基于[物种名称]种子的转录组和代谢组数据构建了AktNACs共表达网络和代谢物相关网络。共表达网络的结果表明,25个AtNAC基因与233个转录因子共表达。代谢物相关性分析表明,23个AktNACs与28种上调代谢物高度相关。此外,基于涉及AktNACs、转录因子和代谢物的相关性分析,25个AktNACs和235个转录因子与141种代谢物形成了共表达网络。值得注意的是,[AktNACs中的某一个或某几个]参与了35种不同代谢物的合成。其中8种与[AktNACs中的某一个或某几个]强烈相关的代谢物在种子早期发育过程中上调。这些研究可能为深入了解AktNACs基因的进化、可能的功能和表达提供线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/74c5/10096588/3493675a90dc/plants-12-01518-g001.jpg

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