卵菌巨大拉格菌ARSEF 373基因组草图序列的净化与注释
Decontamination and Annotation of the Draft Genome Sequence of the Oomycete Lagenidium giganteum ARSEF 373.
作者信息
Morgan William R, Tartar Aurélien
机构信息
Department of Biology, The College of Wooster, Wooster, Ohio, USA.
Department of Biological Sciences, Nova Southeastern University, Fort Lauderdale, Florida, USA.
出版信息
Microbiol Resour Announc. 2023 May 17;12(5):e0134622. doi: 10.1128/mra.01346-22. Epub 2023 Apr 13.
Abstract
Scaffolds of a previously published Lagenidium giganteum ARSEF 373 genome assembly found at GenBank were filtered to remove contaminating sequences. Genome annotation of the 437 scaffolds (total length, 56.2 MB; GC content, 58.8%) with confirmed sequences identified 13,069 potential protein-coding genes, encoding at least 737 predicted secreted proteins and >100 putative translocated effectors.
摘要
在GenBank中找到的先前发表的巨大拉格孢菌ARSEF 373基因组组装的支架经过筛选以去除污染序列。对437个支架（总长度56.2 MB；GC含量58.8%）进行基因组注释，其中已确认的序列鉴定出13,069个潜在的蛋白质编码基因，编码至少737个预测的分泌蛋白和100多个推定的易位效应子。
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