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产寄生真菌的卵菌菌株CBS 530.74的基因组序列草图

Draft Genome Sequence of the Mycoparasitic Oomycete Strain CBS 530.74.

作者信息

Kushwaha Sandeep K, Vetukuri Ramesh R, Grenville-Briggs Laura J

机构信息

Department of Plant Breeding, Swedish University of Agricultural Sciences, Alnarp, Sweden.

Department of Biology, NBIS, Lund University, Lund, Sweden.

出版信息

Genome Announc. 2017 May 25;5(21):e00346-17. doi: 10.1128/genomeA.00346-17.

DOI:10.1128/genomeA.00346-17
PMID:28546478
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5477391/
Abstract

The oomycete is a mycoparasite and licenced biological control agent. Here, we report the draft genome sequence of strain CBS 530.74, which is 36.80 Mb. It contains 341 scaffolds and 11,647 predicted protein-coding genes. As reported for plant-pathogenic species, RXLR-type effector sequences are absent.

摘要

卵菌是一种真菌寄生菌和许可的生物防治剂。在此,我们报告了CBS 530.74菌株的基因组草图序列,其大小为36.80 Mb。它包含341个支架和11,647个预测的蛋白质编码基因。正如对植物致病物种的报道一样,该菌株不存在RXLR型效应子序列。

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本文引用的文献

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Genome Announc. 2017 Mar 23;5(12):e00057-17. doi: 10.1128/genomeA.00057-17.
2
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3
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO:利用单拷贝同源基因评估基因组组装和注释的完整性。
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The carbohydrate-active enzymes database (CAZy) in 2013.2013 版碳水化合物活性酶数据库(CAZy)。
Nucleic Acids Res. 2014 Jan;42(Database issue):D490-5. doi: 10.1093/nar/gkt1178. Epub 2013 Nov 21.
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Fungal Biol. 2013 Mar;117(3):163-72. doi: 10.1016/j.funbio.2013.01.001. Epub 2013 Jan 19.
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