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基于整合生物信息学分析鉴定抑郁症和阿尔茨海默病相关的新型生物标志物。

Identification of novel biomarkers linking depressive disorder and Alzheimer's disease based on an integrative bioinformatics analysis.

机构信息

Out-Patient Department, Wuhan Mental Health Center, Wuhan, 430012, Hubei Province, China.

Out-Patient Department, Wuhan Hospital for Psychotherapy, Wuhan, 430012, Hubei Province, China.

出版信息

BMC Genom Data. 2023 Apr 15;24(1):22. doi: 10.1186/s12863-023-01120-x.

Abstract

BACKGROUND

Previous reports revealed that a history of major depressive disorder (MDD) increased the risk of Alzheimer's disease (AD). The immune disorder is associated with MDD and AD pathophysiology. We aimed to identify differentially expressed immune-related genes (DEIRGs) that are involved in the pathogenesis of MDD and AD.

METHODS

We downloaded mRNA expression profiles (GSE76826 and GSE5281) from the Gene Expression Omnibus (GEO) database. The R software was used to identify DEIRGs for the two diseases separately. Functional enrichment analysis and PPI network of DEIRGs were performed. Finally, the relationship between shared DEIRGs and immune infiltrates of AD and MDD were analyzed, respectively.

RESULTS

A total of 121 DEIRGs linking AD and MDD were identified. These genes were significantly enriched in immune-related pathways, such as the JAK-STAT signaling pathway, regulation of chemotaxis, chemotaxis, cytokine-cytokine receptor interaction, and primary immunodeficiency. Furthermore, three shared DEIRGs (IL1R1, CHGB, and NRG1) were identified. Correlation analysis between DEIRGs and immune cells revealed that IL1R1 and NRG1 had a negative or positive correlation with some immune cells both in AD and MDD.

CONCLUSION

Both DEIRGs and immune cell infiltrations play a vital role in the pathogenesis of AD and MDD. Our findings indicated that there are common genes and biological processes between MDD and AD, which provides a theoretical basis for the study of the comorbidity of MDD and AD.

摘要

背景

先前的报告显示,重度抑郁症(MDD)病史会增加阿尔茨海默病(AD)的风险。免疫紊乱与 MDD 和 AD 的病理生理学有关。我们旨在确定参与 MDD 和 AD 发病机制的差异表达免疫相关基因(DEIRGs)。

方法

我们从基因表达综合数据库(GEO)下载了 mRNA 表达谱(GSE76826 和 GSE5281)。R 软件用于分别识别两种疾病的 DEIRGs。对 DEIRGs 进行功能富集分析和 PPI 网络分析。最后,分别分析了共享 DEIRGs 与 AD 和 MDD 免疫浸润之间的关系。

结果

共鉴定出 121 个与 AD 和 MDD 相关的 DEIRGs。这些基因在免疫相关途径中显著富集,如 JAK-STAT 信号通路、趋化作用调节、趋化作用、细胞因子-细胞因子受体相互作用和原发性免疫缺陷。此外,还鉴定出了三个共享的 DEIRGs(IL1R1、CHGB 和 NRG1)。DEIRGs 与免疫细胞之间的相关性分析表明,IL1R1 和 NRG1 在 AD 和 MDD 中与某些免疫细胞呈负相关或正相关。

结论

DEIRGs 和免疫细胞浸润在 AD 和 MDD 的发病机制中都起着重要作用。我们的研究结果表明,MDD 和 AD 之间存在共同的基因和生物学过程,这为研究 MDD 和 AD 的共病提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf69/10105463/b99fe53e5b21/12863_2023_1120_Fig1_HTML.jpg

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