基于机器学习的膀胱癌患者肿瘤浸润免疫细胞相关模型的鉴定,该模型对改善预后和免疫治疗反应具有重要意义。
Machine learning-based identification of tumor-infiltrating immune cell-associated model with appealing implications in improving prognosis and immunotherapy response in bladder cancer patients.
机构信息
Department of Urology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
出版信息
Front Immunol. 2023 Mar 31;14:1171420. doi: 10.3389/fimmu.2023.1171420. eCollection 2023.
BACKGROUND
Immune cells are crucial components of the tumor microenvironment (TME) and regulate cancer cell development. Nevertheless, the clinical implications of immune cell infiltration-related mRNAs for bladder cancer (BCa) are still unclear.
METHODS
A 10-fold cross-validation framework with 101 combinations of 10 machine-learning algorithms was employed to develop a consensus immune cell infiltration-related signature (IRS). The predictive performance of IRS in terms of prognosis and immunotherapy was comprehensively evaluated.
RESULTS
The IRS demonstrated high accuracy and stable performance in prognosis prediction across multiple datasets including TCGA-BLCA, eight independent GEO datasets, our in-house cohort (PUMCH_Uro), and thirteen immune checkpoint inhibitors (ICIs) cohorts. Additionally, IRS was superior to traditional clinicopathological features (e.g., stage and grade) and 94 published signatures. Furthermore, IRS was an independent risk factor for overall survival in TCGA-BLCA and several GEO datasets, and for recurrence-free survival in PUMCH_Uro. In the PUMCH_Uro cohort, patients in the high-IRS group were characterized by upregulated CD8A and PD-L1 and TME of inflamed and immunosuppressive phenotypes. As predicted, these patients should benefit from ICI therapy and chemotherapy. Furthermore, in the ICI cohorts, the high-IRS group was related to a favorable prognosis and responders have dramatically higher IRS compared to non-responders.
CONCLUSIONS
Generally, these indicators suggested the promising application of IRS in urological practices for the early identification of high-risk patients and potential candidates for ICI application to prolong the survival of individual BCa patients.
背景
免疫细胞是肿瘤微环境(TME)的重要组成部分,调节癌细胞的发展。然而,免疫细胞浸润相关 mRNA 对膀胱癌(BCa)的临床意义仍不清楚。
方法
采用 10 倍交叉验证框架,结合 10 种机器学习算法的 101 种组合,开发共识免疫细胞浸润相关特征(IRS)。综合评估 IRS 对预后和免疫治疗的预测性能。
结果
IRS 在包括 TCGA-BLCA、8 个独立的 GEO 数据集、我们内部队列(PUMCH_Uro)和 13 个免疫检查点抑制剂(ICIs)队列在内的多个数据集的预后预测中表现出高准确性和稳定性能。此外,IRS 优于传统的临床病理特征(如分期和分级)和 94 个已发表的特征。此外,IRS 是 TCGA-BLCA 和几个 GEO 数据集总生存期的独立危险因素,也是 PUMCH_Uro 无复发生存期的独立危险因素。在 PUMCH_Uro 队列中,高 IRS 组的患者表现为 CD8A 和 PD-L1 上调,以及炎症和免疫抑制表型的 TME。正如预测的那样,这些患者应该受益于 ICI 治疗和化疗。此外,在 ICI 队列中,高 IRS 组与预后良好相关,且应答者的 IRS 明显高于无应答者。
结论
总体而言,这些指标表明 IRS 在泌尿科实践中有很大的应用潜力,可以早期识别高危患者,并为 ICI 的应用提供潜在候选者,以延长个别 BCa 患者的生存时间。