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机器学习势能是否优于最优调谐传统力场?以氟醇为例的研究。

Does a Machine-Learned Potential Perform Better Than an Optimally Tuned Traditional Force Field? A Case Study on Fluorohydrins.

机构信息

School of Chemistry, University of Southampton, Highfield, Southampton SO17 1BJ, United Kingdom.

Astex Pharmaceuticals, 436 Cambridge Science Park, Milton Road, Cambridge CB4 0QA, United Kingdom.

出版信息

J Chem Inf Model. 2023 May 8;63(9):2810-2827. doi: 10.1021/acs.jcim.2c01510. Epub 2023 Apr 18.

DOI:10.1021/acs.jcim.2c01510
PMID:37071825
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10170518/
Abstract

We present a comparative study that evaluates the performance of a machine learning potential (ANI-2x), a conventional force field (GAFF), and an optimally tuned GAFF-like force field in the modeling of a set of 10 γ-fluorohydrins that exhibit a complex interplay between intra- and intermolecular interactions in determining conformer stability. To benchmark the performance of each molecular model, we evaluated their energetic, geometric, and sampling accuracies relative to quantum-mechanical data. This benchmark involved conformational analysis both in the gas phase and chloroform solution. We also assessed the performance of the aforementioned molecular models in estimating nuclear spin-spin coupling constants by comparing their predictions to experimental data available in chloroform. The results and discussion presented in this study demonstrate that ANI-2x tends to predict stronger-than-expected hydrogen bonding and overstabilize global minima and shows problems related to inadequate description of dispersion interactions. Furthermore, while ANI-2x is a viable model for modeling in the gas phase, conventional force fields still play an important role, especially for condensed-phase simulations. Overall, this study highlights the strengths and weaknesses of each model, providing guidelines for the use and future development of force fields and machine learning potentials.

摘要

我们进行了一项比较研究,评估了机器学习势(ANI-2x)、传统力场(GAFF)和最佳调谐的 GAFF 类似力场在建模一组 10 种γ-氟醇中的性能,这些分子表现出分子内和分子间相互作用之间的复杂相互作用,从而确定构象稳定性。为了基准化每个分子模型的性能,我们评估了它们相对于量子力学数据的能量、几何和采样准确性。这个基准包括在气相和氯仿溶液中的构象分析。我们还通过将预测值与氯仿中可用的实验数据进行比较,评估了上述分子模型在估计核自旋-自旋耦合常数方面的性能。本研究中的结果和讨论表明,ANI-2x 倾向于预测比预期更强的氢键,并过度稳定全局最小值,并显示出与离域相互作用描述不足相关的问题。此外,虽然 ANI-2x 是气相建模的可行模型,但传统力场仍然发挥着重要作用,特别是对于凝聚相模拟。总体而言,本研究强调了每个模型的优缺点,为力场和机器学习势的使用和未来发展提供了指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/62cb75a38c67/ci2c01510_0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/224862725a15/ci2c01510_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/4198e15125e1/ci2c01510_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/b84665d340c9/ci2c01510_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/3c0261b97260/ci2c01510_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/e27d4ef0c282/ci2c01510_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/55b7aa5d1f74/ci2c01510_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/9fac49945748/ci2c01510_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/4cbee7261f9d/ci2c01510_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/6d56947fc2d4/ci2c01510_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/62cb75a38c67/ci2c01510_0010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/224862725a15/ci2c01510_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/4198e15125e1/ci2c01510_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/b84665d340c9/ci2c01510_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/3c0261b97260/ci2c01510_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/e27d4ef0c282/ci2c01510_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/55b7aa5d1f74/ci2c01510_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/9fac49945748/ci2c01510_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/4cbee7261f9d/ci2c01510_0008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/6d56947fc2d4/ci2c01510_0009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c79a/10170518/62cb75a38c67/ci2c01510_0010.jpg

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