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大肠杆菌色氨酸操纵子的衰减子:体外rho介导RNA聚合酶从转录终止复合物的释放

The attenuator of the tryptophan operon in E.coli: rho-mediated release of RNA polymerase from a transcription termination complex in vitro.

作者信息

Fuller R S, Platt T

出版信息

Nucleic Acids Res. 1978 Dec;5(12):4613-23.

PMID:370776
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC342776/
Abstract

In vivo, termination of transcription at the attenuator site of the tryptophan (trp) operon of E. coli is influenced by the protein termination factor rho. In vitro, termination does not depend on rho factor, and is very efficient in a purified system consisting only of RNA polymerase, the DNA template, nucleoside triphosphates, and buffer. The extent of termination in this system is unaffected over a wide range of salt and nucleoside triphosphate concentration. However, there is a 10-fold stimulation of trp leader mRNA synthesis if rho factor is present during the transcription reaction. This stimulation occurs only at low molar ratios of polymerase to template, and can be blocked by rifampicin. It is thus most likely due to the recycling of RNA polymerase molecules that have been released from the attenuator site by rho factor. In fact, transcription of the trp leader region in vitro results in the fomration of a stable termination complex which can be observed on sucrose gradients or by binding to nitrocellulose filters. These data indicate that a major function of rho at the trp attenuator is to release completed transcripts from a pre-formed termination complex, rather than to cause the cessation of elongation.

摘要

在体内,大肠杆菌色氨酸(trp)操纵子衰减位点处的转录终止受蛋白质终止因子ρ的影响。在体外,转录终止不依赖于ρ因子,并且在仅由RNA聚合酶、DNA模板、核苷三磷酸和缓冲液组成的纯化系统中效率很高。在该系统中,终止程度在很宽的盐和核苷三磷酸浓度范围内不受影响。然而,如果在转录反应过程中存在ρ因子,trp前导mRNA的合成会有10倍的刺激。这种刺激仅在聚合酶与模板的低摩尔比时发生,并且可被利福平阻断。因此,这很可能是由于被ρ因子从衰减位点释放的RNA聚合酶分子的再循环。事实上,体外trp前导区的转录会导致形成稳定的终止复合物,这可以在蔗糖梯度上观察到,或者通过与硝酸纤维素滤膜结合来观察。这些数据表明,ρ在trp衰减子处的主要功能是从预先形成的终止复合物中释放完整的转录本,而不是导致延伸的停止。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/ea8e20e2167b/nar00473-0151-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/48fe04e6b845/nar00473-0147-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/711132b00867/nar00473-0148-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/abff26cd2813/nar00473-0149-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/a035743eb560/nar00473-0150-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/e9cd432dec91/nar00473-0150-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/40cc3d9bcfc7/nar00473-0151-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/ea8e20e2167b/nar00473-0151-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/48fe04e6b845/nar00473-0147-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/711132b00867/nar00473-0148-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/abff26cd2813/nar00473-0149-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/a035743eb560/nar00473-0150-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/e9cd432dec91/nar00473-0150-b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/40cc3d9bcfc7/nar00473-0151-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3ecb/342776/ea8e20e2167b/nar00473-0151-b.jpg

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本文引用的文献

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Relationship between the N function of bacteriophage lambda and host RNA polymerase.噬菌体λ的N功能与宿主RNA聚合酶之间的关系。
J Mol Biol. 1972 Mar 28;65(2):259-72. doi: 10.1016/0022-2836(72)90281-1.
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Termination factor for RNA synthesis.RNA合成的终止因子。
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Regulatory region of the gene for the ompA protein, a major outer membrane protein of Escherichia coli.大肠杆菌主要外膜蛋白ompA蛋白基因的调控区。
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A mutant rho ATPase from Escherichia coli that is temperature-sensitive in the presence of RNA.一种来自大肠杆菌的突变rho ATP酶,在有RNA存在时对温度敏感。
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Studies of RNA release reaction catalyzed by E. coli transcription termination factor rho using isolated ternary transcription complexes.利用分离的三元转录复合物对大肠杆菌转录终止因子rho催化的RNA释放反应进行的研究。
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Nature. 1969 Dec 20;224(5225):1168-74. doi: 10.1038/2241168a0.
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The nucleotide sequence of the lactose messenger ribonucleic acid transcribed from the UV5 promoter mutant of Escherichia coli.从大肠杆菌UV5启动子突变体转录而来的乳糖信使核糖核酸的核苷酸序列。
Proc Natl Acad Sci U S A. 1973 Dec;70(12):3585-9. doi: 10.1073/pnas.70.12.3585.
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Studies of the binding of Escherichia coli RNA polymerase to DNA. I. The role of sigma subunit in site selection.大肠杆菌RNA聚合酶与DNA结合的研究。I. σ亚基在位点选择中的作用。
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Termination of transcription in bacteriophage lambda. Heterogeneous, 3'-terminal oligo-adenylate additions and the effects of rho factor.噬菌体λ转录的终止。异质性3′末端寡聚腺苷酸的添加及ρ因子的作用。
J Biol Chem. 1975 Jun 25;250(12):4755-64.
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Termination of transcription in vitro in the Escherichia coli tryptophan operon leader region.大肠杆菌色氨酸操纵子前导区的体外转录终止
J Mol Biol. 1976 May 15;103(2):383-93. doi: 10.1016/0022-2836(76)90318-1.
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Control of transcription termination.转录终止的调控
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Mutant RNA polymerase of Escherichia coli terminates transcription in strains making defective rho factor.大肠杆菌的突变RNA聚合酶在产生缺陷型ρ因子的菌株中终止转录。
Proc Natl Acad Sci U S A. 1978 Jan;75(1):294-7. doi: 10.1073/pnas.75.1.294.
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In vitro transcription of E. coli tRNA genes.大肠杆菌tRNA基因的体外转录
Nucleic Acids Res. 1977 Nov;4(11):3743-52. doi: 10.1093/nar/4.11.3743.