Gholipour Akram, Malakootian Mahshid, Oveisee Maziar
Cardiogenetic Research Center, Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran.
School of Medicine, Bam University of Medical Sciences, Bam, Kerman, Iran.
Int J Mol Cell Med. 2022;11(2):137-149. doi: 10.22088/IJMCM.BUMS.11.2.137. Epub 2023 Jan 1.
Intervertebral disc degeneration (IDD) is widely known as the principal cause of low back pain, diminishing patients' quality of life and imposing a huge economic burden on healthcare systems worldwide. However, the underlying mechanisms of IDD remain to be determined. This study aimed to scrutinize data sets via bioinformatics to identify microRNAs (miRNAs)/genes and pathways associated with IDD. The array profiling of patients with IDD and individuals without IDD was acquired from the Gene Expression Omnibus (GEO) database (viz., GSE19943, GSE63492, and GSE34095). The expression profiles of miRNAs and genes with differential patterns were analyzed using GEO2R. The target genes of the chosen miRNA were then examined, and in silico functional analyses were performed on the signaling pathways and biological processes of the differentially expressed genes. Three human miRNAs were up and downregulated in IDD patients in the examined data sets. Among them, hsa-miR-508-5p had a significant differential expression in the IDD group, and , , , and , as the targets of hsa-miR-508-5p, were upregulated in the IDD group. Furthermore, extracellular matrix-receptor interactions, focal adhesion, and actin cytoskeleton regulation were important pathways involved in IDD. Our analysis identified hsa-miR-508-5p as a novel miRNA involved in IDD pathogenies. Our findings not only further confirmed the significant role of miRNAs in IDD pathogenesis but also extended the spectrum of the miRNAs and genes involved in IDD. Though, still, further experimental investigations are needed to confirm our findings.
椎间盘退变(IDD)是导致腰痛的主要原因,这已广为人知,它降低了患者的生活质量,并给全球医疗保健系统带来了巨大的经济负担。然而,IDD的潜在机制仍有待确定。本研究旨在通过生物信息学审查数据集,以识别与IDD相关的微小RNA(miRNA)/基因和通路。从基因表达综合数据库(GEO)(即GSE19943、GSE63492和GSE34095)获取了IDD患者和非IDD个体的阵列分析数据。使用GEO2R分析具有差异模式的miRNA和基因的表达谱。然后检查所选miRNA的靶基因,并对差异表达基因的信号通路和生物学过程进行计算机功能分析。在所检查的数据集中,有三种人类miRNA在IDD患者中上调和下调。其中,hsa-miR-508-5p在IDD组中具有显著差异表达,并且作为hsa-miR-508-5p的靶标,在IDD组中上调。此外,细胞外基质-受体相互作用、粘着斑和肌动蛋白细胞骨架调节是参与IDD的重要通路。我们的分析确定hsa-miR-508-5p是一种参与IDD发病机制的新型miRNA。我们的发现不仅进一步证实了miRNA在IDD发病机制中的重要作用,还扩展了参与IDD的miRNA和基因的范围。不过,仍需要进一步的实验研究来证实我们的发现。