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从萨斯喀彻温省肉鸡养殖场分离的245株禽类及肉鸡舍环境相关大肠杆菌菌株的混合基因组组装

Hybrid Genome Assemblies of 245 Avian and Broiler Barn Environment-Associated Escherichia coli Strains Isolated from Saskatchewan Broiler Farms.

作者信息

Sanderson Haley, Nnajide Chinenye R, McCarthy Madeline C, Singh Reema, Rubin Joseph E, Dillon Jo-Anne R, White Aaron P

机构信息

Vaccine and Infectious Disease Organization (VIDO), University of Saskatchewan, Saskatoon, Saskatchewan, Canada.

Department of Biochemistry, Microbiology and Immunology, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.

出版信息

Microbiol Resour Announc. 2023 May 17;12(5):e0011023. doi: 10.1128/mra.00110-23. Epub 2023 Apr 26.

DOI:10.1128/mra.00110-23
PMID:37098978
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10190287/
Abstract

Escherichia coli infections in poultry cause significant morbidity and economic losses for producers each year. In a 3-year period, we collected and sequenced the whole genomes of E. coli disease isolates ( = 91), isolates from presumed healthy birds ( = 61), and isolates from 8 barn sites ( = 93) on broiler farms in Saskatchewan.

摘要

家禽中的大肠杆菌感染每年都会给养殖户带来严重的发病问题和经济损失。在三年时间里，我们收集并测序了来自萨斯喀彻温省肉鸡养殖场的大肠杆菌病分离株（n = 91）、假定健康鸟类的分离株（n = 61）以及8个禽舍地点的分离株（n = 93）的全基因组。

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4
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