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蜡样芽孢杆菌2-6A的全基因组序列,该菌株是从太平洋深海热液沉积物中分离出的一种产海洋胞外多糖的细菌。

Complete genome sequence of Bacillus cereus 2-6A, a marine exopolysaccharide-producing bacterium isolated from deep-sea hydrothermal sediment of the Pacific Ocean.

作者信息

Zou Xuan, Suo Chuan-Lei, Geng Xiao-Mei, Li Chun-Yang, Fu Hui-Hui, Zhang Yi, Wang Peng, Sun Mei-Ling

机构信息

College of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao 266003, China.

College of Marine Life Sciences, and Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao 266003, China.

出版信息

Mar Genomics. 2023 Jun;69:101029. doi: 10.1016/j.margen.2023.101029. Epub 2023 Apr 3.

Abstract

Bacillus cereus 2-6A, was isolated from the sediments in the hydrothermal area of the Pacific Ocean with a water depth of 2628 m. In this study, we report the whole genome sequence of strain 2-6A and analyze that to understand its metabolic capacities and biosynthesis potential of natural products. The genome of strain 2-6A consists of a circular chromosome of 5,191,018 bp with a GC content of 35.3 mol% and two plasmids of 234,719 bp and 411,441 bp, respectively. Genomic data mining reveals that strain 2-6A has several gene clusters involved in exopolysaccharides (EPSs) and polyhydroxyalkanoates (PHAs) production and complex polysaccharides degradation. It also possesses a variety of genes for allowing strain 2-6A to cope with osmotic stress, oxidative stress, heat shock, cold shock and heavy metal stress, which could play a vital role in the adaptability of the strain to hydrothermal environments. Gene clusters for secondary metabolite production, such as lasso peptide and siderophore, are also predicted. Therefore, genome sequencing and data mining provide insights into the molecular mechanisms of Bacillus in adapting to hydrothermal deep ocean environments and can facilitate further experimental exploration.

摘要

蜡样芽孢杆菌2-6A是从太平洋水深2628米的热液区沉积物中分离得到的。在本研究中,我们报告了菌株2-6A的全基因组序列,并对其进行分析以了解其代谢能力和天然产物的生物合成潜力。菌株2-6A的基因组由一条5,191,018 bp的环状染色体组成,GC含量为35.3 mol%,以及两个分别为234,719 bp和411,441 bp的质粒。基因组数据挖掘表明,菌株2-6A有几个参与胞外多糖(EPSs)和聚羟基脂肪酸酯(PHAs)产生以及复杂多糖降解的基因簇。它还拥有多种基因,使菌株2-6A能够应对渗透胁迫、氧化胁迫、热休克、冷休克和重金属胁迫,这可能对该菌株适应热液环境起着至关重要的作用。还预测了次级代谢产物如套索肽和铁载体的基因簇。因此,基因组测序和数据挖掘为芽孢杆菌适应热液深海环境的分子机制提供了见解,并有助于进一步的实验探索。

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