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嗜酸硫杆菌 TPY 菌株的全基因组分析，该菌株分离自太平洋的一处热液喷口。

Complete genome analysis of Sulfobacillus acidophilus strain TPY, isolated from a hydrothermal vent in the Pacific Ocean.

机构信息

Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, State Oceanic Administration, No.184 Daxue Road, Xiamen 361005, China.

出版信息

J Bacteriol. 2011 Oct;193(19):5555-6. doi: 10.1128/JB.05684-11.

DOI:10.1128/JB.05684-11
PMID:21914875
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3187392/
Abstract

Sulfobacillus acidophilus strain TPY is a moderately thermoacidophilic bacterium originally isolated from a hydrothermal vent in the Pacific Ocean. Ferrous iron and sulfur oxidation in acidic environments in strain TPY have been confirmed. Here we report the genome sequence and annotation of the strain TPY, which is the first complete genome of Sulfobacillus acidophilus.

摘要

嗜酸硫杆菌 TPY 菌株是一种中度嗜热嗜酸细菌，最初从太平洋的一个热液喷口分离得到。该菌株在酸性环境中能够进行亚铁离子和硫的氧化。本文报道了该菌株的全基因组序列和注释，这是嗜酸硫杆菌属的首个完整基因组。

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本文引用的文献

1
Identification of differentially expressed genes in Sulfobacillus sp. TPY grown on either elemental sulphur or Fe(2+).在以元素硫或Fe(2+)为底物生长的嗜热硫化还原菌TPY中差异表达基因的鉴定
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2
KEGG for representation and analysis of molecular networks involving diseases and drugs.KEGG 用于表示和分析涉及疾病和药物的分子网络。
Nucleic Acids Res. 2010 Jan;38(Database issue):D355-60. doi: 10.1093/nar/gkp896. Epub 2009 Oct 30.
3
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.氧化亚铁硫杆菌的代谢：从基因组序列到工业应用
BMC Genomics. 2008 Dec 11;9:597. doi: 10.1186/1471-2164-9-597.
4
CRISPRcompar: a website to compare clustered regularly interspaced short palindromic repeats.CRISPRcompar：一个用于比较成簇规律间隔短回文重复序列的网站。
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W145-8. doi: 10.1093/nar/gkn228. Epub 2008 Apr 28.
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CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.CRISPRFinder：一种用于识别成簇规律间隔短回文重复序列的网络工具。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W52-7. doi: 10.1093/nar/gkm360. Epub 2007 May 30.
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The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats.CRISPRdb数据库以及用于显示CRISPRs并生成间隔序列和重复序列字典的工具。
BMC Bioinformatics. 2007 May 23;8:172. doi: 10.1186/1471-2105-8-172.
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RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
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From genomics to chemical genomics: new developments in KEGG.从基因组学到化学基因组学：KEGG的新进展
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D354-7. doi: 10.1093/nar/gkj102.
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Apparent redundancy of electron transfer pathways via bc(1) complexes and terminal oxidases in the extremophilic chemolithoautotrophic Acidithiobacillus ferrooxidans.嗜酸嗜铁氧化硫杆菌中通过bc(1)复合物和末端氧化酶的电子传递途径的明显冗余性。
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The COG database: an updated version includes eukaryotes.COG数据库：更新版本涵盖真核生物。
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