College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
Genes (Basel). 2023 Apr 18;14(4):939. doi: 10.3390/genes14040939.
The gene is crucial for plant morphological development and growth. Physicochemical characteristics, phylogenetic relationships, chromosomal localization, cis-acting elements, and tissue-specific expression patterns of the 11 genes found in the Japanese apricot genome in this study were examined. Proteins of 11 were soluble proteins with isoelectric points between 4.29 and 6.53, molecular masses between 15.732 and 44.011 kDa, and amino acid counts between 140 and 430. The identified gene family was split into three subfamilies by jointly constructing the phylogenetic tree of KNOX proteins in Japanese apricot and . Combined outcomes of the analyzed conserved motifs and gene structures of the 11 genes from the same subfamily displayed comparable gene structure and motif patterns. The 11 members were distributed across six chromosomes, while two sets of genes were found to be collinear. Analysis of the 2000 bp promoter upstream of the coding region of the gene revealed that most genes might be involved in the physiological metabolism, growth and development processes of plants. The gene expression profile revealed that these genes were expressed at varying levels in different tissues, and most of them were linked to the meristems of leaf and flower buds, suggesting that may be involved in plants' apical meristems. In , functional validation of and revealed that these two genes might be involved in regulating leaf and stem development. In addition to laying the groundwork for future research on the function of these genes, understanding the evolutionary relationships between members of the gene family provides opportunities for future breeding in Japanese apricots.
该基因对植物形态发育和生长至关重要。本研究对日本甜樱桃基因组中发现的 11 个基因的理化特性、系统发育关系、染色体定位、顺式作用元件和组织特异性表达模式进行了研究。11 个基因的蛋白均为可溶性蛋白,等电点在 4.29 到 6.53 之间,分子量在 15.732 到 44.011 kDa 之间,氨基酸数在 140 到 430 之间。通过共同构建日本甜樱桃和梨的 KNOX 蛋白系统发育树,将鉴定出的基因家族分为三个亚家族。同一亚家族的 11 个基因的保守基序和基因结构的联合分析结果显示,其具有相似的基因结构和基序模式。这 11 个成员分布在 6 条染色体上,而两组 基因被发现是共线性的。对编码区上游 2000bp 启动子的分析表明,大多数 基因可能参与植物的生理代谢、生长发育过程。基因表达谱显示,这些基因在不同组织中表达水平不同,其中大多数与叶片和花芽的分生组织有关,表明 可能参与植物的顶端分生组织。在梨中,对 和 的功能验证表明,这两个基因可能参与调节叶片和茎的发育。除了为这些基因的功能研究奠定基础外,了解 基因家族成员之间的进化关系也为未来的日本甜樱桃育种提供了机会。