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TMA-Mate:一种用于构建任意布局组织微阵列的开源模块化工具包。

TMA-Mate: An open-source modular toolkit for constructing tissue microarrays of arbitrary layouts.

作者信息

Pazaitis Nikolaos, Kaiser Alexandra

机构信息

Institute of Pathology 'Georg Schmorl', Municipal Hospital Dresden, Campus Friedrichstadt, Friedrichstrasse 41, 01067 Dresden, Germany.

出版信息

HardwareX. 2023 Apr 11;14:e00419. doi: 10.1016/j.ohx.2023.e00419. eCollection 2023 Jun.

DOI:10.1016/j.ohx.2023.e00419
PMID:37128356
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10148229/
Abstract

Biomedical research and quality control procedures often demand a variety of microscopic analysis of numerous formalin-fixed and paraffin-embedded (FFPE) tissue samples from different individuals of both healthy and diseased regions of interest. Depending on the number of samples to be analyzed, conventional processing of each FFPE block separately can be laborious or impracticable. This effort can be drastically reduced by using tissue microarrays (TMAs). TMAs have a wide range of applications and can be considered as a high-throughput method to process up to hundreds of miniaturized tissue samples simultaneously on a single microscopy slide, in order to reduce labor, costs and sample consumption, and to increase results comparability. Several commercial and self-made solutions to fabricate TMAs with varying degrees of automation are available. However, these solutions may not be suitable for every situation, either due to high costs, high complexity, lack of precision or lack of flexibility, especially when diagnostically oriented pathology institutes or laboratories with constrained resources are considered. This article introduces the TMA-Mate, an open-source 3D printable modular toolkit for constructing high-density TMAs of arbitrary layouts, providing an affordable, lightweight, and accessible procedure to implement TMAs into existing histology processing pipelines. Step-by-step demonstrations for replicating the hardware and constructing TMAs are included.

摘要

生物医学研究和质量控制程序通常需要对来自健康和患病感兴趣区域的不同个体的大量福尔马林固定石蜡包埋(FFPE)组织样本进行各种显微镜分析。根据要分析的样本数量,分别对每个FFPE块进行传统处理可能既费力又不切实际。使用组织微阵列(TMA)可以大大减少这种工作量。TMA具有广泛的应用,可以被视为一种高通量方法,能够在单个显微镜载玻片上同时处理多达数百个小型化组织样本,以减少劳动力、成本和样本消耗,并提高结果的可比性。有几种不同自动化程度的用于制造TMA的商业和自制解决方案。然而,这些解决方案可能并不适用于每种情况,这要么是由于成本高、复杂性高、缺乏精度,要么是缺乏灵活性,特别是考虑到以诊断为导向的病理研究所或资源有限的实验室时。本文介绍了TMA-Mate,这是一种用于构建任意布局的高密度TMA的开源3D可打印模块化工具包,它提供了一种经济实惠、轻便且易于使用的程序,可将TMA纳入现有的组织学处理流程。文中还包括了复制硬件和构建TMA的分步演示。

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J Pathol Inform. 2022 Jun 28;13:100118. doi: 10.1016/j.jpi.2022.100118. eCollection 2022.
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Expression of estrogen and progesterone receptors, HER2 protein and Ki-67 proliferation index in breast carcinoma in both tumor tissue and tissue microarray.在肿瘤组织和组织微阵列中检测乳腺癌组织中雌激素和孕激素受体、HER2 蛋白和 Ki-67 增殖指数的表达。
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组织微阵列 - 简要历史、技术及临床应用前景。
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Diagnostic and prognostic impact of cytokeratin 19 expression analysis in human tumors: a tissue microarray study of 13,172 tumors.细胞角蛋白 19 表达分析在人类肿瘤中的诊断和预后影响:对 13172 个肿瘤的组织微阵列研究。
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Preparation, construction and high-throughput automated analysis of human brain tissue microarrays for neurodegenerative disease drug development.用于神经退行性疾病药物开发的人类脑组织微阵列的制备、构建和高通量自动化分析。
Nat Protoc. 2021 Apr;16(4):2308-2343. doi: 10.1038/s41596-021-00503-7. Epub 2021 Mar 19.
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Simple method for constructing and repairing tissue microarrays using simple equipment.使用简单设备构建和修复组织微阵列的简单方法。
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