inbiome BV, Amsterdam, The Netherlands.
Department of Medical Microbiology & Infection Control, Amsterdam UMC, location Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
J Clin Microbiol. 2023 Jun 20;61(6):e0015423. doi: 10.1128/jcm.00154-23. Epub 2023 May 8.
Diagnosis of bone and joint infections (BJI) relies on microbiological culture which has a long turnaround time and is challenging for certain bacterial species. Rapid molecular methods may alleviate these obstacles. Here, we investigate the diagnostic performance of IS-pro, a broad-scope molecular technique that can detect and identify most bacteria to the species level. IS-pro additionally informs on the amount of human DNA present in a sample, as a measure of leukocyte levels. This test can be performed in 4 h with standard laboratory equipment. Residual material of 591 synovial fluid samples derived from native and prosthetic joints from patients suspected of joint infections that were sent for routine diagnostics was collected and subjected to the IS-pro test. Bacterial species identification as well as bacterial load and human DNA load outcomes of IS-pro were compared to those of culture. At sample level, percent positive agreement (PPA) between IS-pro and culture was 90.6% (95% CI 85.7- to 94%) and negative percent agreement (NPA) was 87.7% (95% CI 84.1 to 90.6%). At species level PPA was 80% (95% CI 74.3 to 84.7%). IS-pro yielded 83 extra bacterial detections over culture for which we found supporting evidence for true positivity in 40% of the extra detections. Missed detections by IS-pro were mostly related to common skin species in low abundance. Bacterial and human DNA signals measured by IS-pro were comparable to bacterial loads and leukocyte counts reported by routine diagnostics. We conclude that IS-pro showed an excellent performance for fast diagnostics of bacterial BJI.
骨与关节感染(BJI)的诊断依赖于微生物培养,该方法具有较长的周转时间,并且某些细菌种类的检测具有挑战性。快速的分子方法可能会缓解这些障碍。在这里,我们研究了 IS-pro 的诊断性能,IS-pro 是一种广谱的分子技术,可以检测和鉴定大多数细菌到种水平。IS-pro 还可以报告样本中存在的人 DNA 量,作为白细胞水平的衡量标准。该测试可以使用标准实验室设备在 4 小时内完成。收集了怀疑患有关节感染的患者的 591 份来自天然和假体关节的滑液样本的剩余材料,并对其进行 IS-pro 测试。将 IS-pro 的细菌种类鉴定以及细菌载量和人 DNA 载量结果与培养结果进行了比较。在样本水平上,IS-pro 与培养的阳性符合率(PPA)为 90.6%(95%CI 85.7 至 94%),阴性符合率(NPA)为 87.7%(95%CI 84.1 至 90.6%)。在种水平上,PPA 为 80%(95%CI 74.3 至 84.7%)。IS-pro 比培养法多检测出 83 种细菌,其中我们在 40%的额外检测中发现了真正阳性的证据。IS-pro 漏检的主要是低丰度的常见皮肤菌。IS-pro 测量的细菌和人 DNA 信号与常规诊断报告的细菌载量和白细胞计数相当。我们得出结论,IS-pro 对快速诊断细菌性 BJI 具有出色的性能。