Laboratory of Fish Pathology, School of Marine Biosciences, Kitasato University, 1-15-1 Kitasato, Minami-Ku, Sagamihara, Kanagawa, 252-0373, Japan.
J Mol Evol. 2023 Aug;91(4):536-551. doi: 10.1007/s00239-023-10113-4. Epub 2023 May 8.
Mammalian plasma kallikrein (PK) and coagulation factor XI (fXI) are serine proteases that play in the kinin-kallikrein cascade and in the blood clotting pathway. These proteases share sequence homology and have four apple domains (APDs) and a serine protease domain (SPD) from their N-terminus to C-terminus. No homologs of these proteases are believed to be present in fish species, except for lobe-finned fish. Fish, however, have a unique lectin, named kalliklectin (KL), which is composed of APDs only. In the present study, we found genomic sequences encoding a protein with both APDs and SPD in a few cartilaginous and bony fishes, including the channel catfish Ictalurus punctatus, using bioinformatic analysis. Furthermore, we purified two ~ 70 kDa proteins from the blood plasma of the catfish using mannose-affinity and gel filtration chromatography sequentially. Using de novo sequencing with quadrupole time-of-flight tandem mass spectrometry, several internal amino acid sequences in these proteins were mapped onto possible PK/fXI-like sequences that are thought to be splicing variants. Exploration of APD-containing proteins in the hagfish genome database and phylogenetic analysis suggested that the PK/fXI-like gene originated from hepatocyte growth factor, and that the gene was acquired in a common ancestor of jawed fish. Synteny analysis provided evidence for chromosomal translocation around the PK/fXI-like locus that occurred in the common ancestor of holosteans and teleosts after separation from the lobe-finned fish lineage, or gene duplication into two chromosomes, followed by independent gene losses. This is the first identification of PK/fXI-like proteins in teleosts.
哺乳动物血浆激肽释放酶 (PK) 和凝血因子 XI (fXI) 是丝氨酸蛋白酶,在激肽-激肽释放酶级联和血液凝固途径中发挥作用。这些蛋白酶具有序列同源性,从 N 端到 C 端具有四个苹果结构域 (APD) 和一个丝氨酸蛋白酶结构域 (SPD)。除了肺鱼外,人们认为这些蛋白酶在鱼类中没有同源物。然而,鱼类有一种独特的凝集素,称为激肽凝集素 (KL),它仅由 APD 组成。在本研究中,我们使用生物信息学分析在几种软骨鱼和硬骨鱼中发现了编码具有 APD 和 SPD 的蛋白质的基因组序列,包括斑点叉尾鮰 Ictalurus punctatus。此外,我们使用甘露糖亲和和凝胶过滤层析依次从鱼的血浆中纯化了两种 ~70 kDa 的蛋白质。使用四重四极杆飞行时间串联质谱的从头测序,将这些蛋白质中的几个内部氨基酸序列映射到可能的 PK/fXI 样序列上,这些序列被认为是剪接变体。在盲鳗基因组数据库中探索含 APD 的蛋白质,并进行系统发育分析表明,PK/fXI 样基因来源于肝细胞生长因子,并且该基因是在有颌鱼类的共同祖先中获得的。同线性分析为在与肺鱼谱系分离后硬骨鱼和真骨鱼的共同祖先中发生的 PK/fXI 样基因座周围的染色体易位或两个染色体上的基因复制提供了证据,然后是独立的基因丢失。这是首次在真骨鱼类中鉴定出 PK/fXI 样蛋白。