Institute of Plant Protection, Tianjin Academy of Agricultural Sciences, Tianjin, 300192, China.
Institute of Vegetable Research, Tianjin Academy of Agricultural Sciences, Tianjin, 300192, China.
Mol Plant Microbe Interact. 2023 Oct;36(10):670-673. doi: 10.1094/MPMI-04-23-0039-A. Epub 2023 Oct 18.
is an important seedborne pathogenic fungus causing severe Cercospora leaf spot of celery worldwide. Here, we first present a complete genome assembly of QCYBC from celery, based on Illumina paired-end and PacBio long-read sequencing data. The high-quality genome assembly contains 34 scaffolds with a 34.81 Mb genome size, 330 interspersed repeat genes, 114 noncoding RNAs, and 12,631 protein-coding genes. The benchmarking universal single-copy ortholog (BUSCO) analysis indicated that 98.2% of the BUSCOs were complete, whereas 0.3, 0.7, and 1.1% were duplicated, fragmented, and missing, respectively. Based on annotation, 508 carbohydrate-active enzymes, 243 cytochromes P450 enzymes, 1,639 translocators, 1,358 transmembrane proteins, and 1,146 virulence genes were identified. This genome sequence provides a valuable reference for future studies to improve understanding of the -celery pathosystem. [Formula: see text] Copyright © 2023 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
是一种重要的种子携带致病性真菌，可导致芹菜在全球范围内发生严重的尾孢叶斑病。在这里，我们首次根据 Illumina 配对末端和 PacBio 长读测序数据，提供了来自芹菜的完整的 QCYBC 基因组组装。高质量的基因组组装包含 34 个支架，基因组大小为 34.81 Mb，330 个散布重复基因，114 个非编码 RNA 和 12631 个蛋白质编码基因。基准通用单拷贝同源物（BUSCO）分析表明，98.2%的 BUSCO 是完整的，而分别有 0.3%、0.7%和 1.1%的 BUSCO 是重复的、断裂的和缺失的。根据注释，鉴定出 508 种碳水化合物活性酶、243 种细胞色素 P450 酶、1639 种转运蛋白、1358 种跨膜蛋白和 1146 种毒力基因。该基因组序列为未来的研究提供了有价值的参考，有助于提高对 -celery 病理系统的理解。[公式：见正文] 版权所有 © 2023 作者。这是一份在 CC BY-NC-ND 4.0 国际许可下发布的开放获取文章。
