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基于 Augmin 家族基因的 LGG 患者预后模型。

A prognostic model based on the Augmin family genes for LGG patients.

机构信息

Department of Oncology, The Second Affiliated Hospital of Anhui Medical University, Hefei, Anhui, China.

出版信息

Sci Rep. 2023 May 9;13(1):7520. doi: 10.1038/s41598-023-34779-4.

Abstract

Gliomas are the most prevalent primary tumors in the central nervous system. Despite some breakthroughs in the treatment of glioma in recent years, survival rates remain low. Although genes of the Augmin family play a key role in microtubule nucleation, the role they play in gliomas is unclear. Transcriptome data were extracted from UCSC XENA and GTEx for low-grade glioma (LGG) and normal tissues, respectively. The protein interaction network associated with Augmin family genes was established using STRING and GeneMANIA databases. Enrichment analysis of gene-related functions and pathways was used to explore potential biological pathways and TIMER to assess immune cell infiltration. Regression analysis and Kaplan-Meier analysis were used to look at the clinical characteristics of the Augmin family genes and the association with the prognosis of patients with glioma. The results showed that the mRNA expression of Augmin family genes was significantly elevated in LGG tissues, except for HAUS7. Immunoregulation, cell cycle, apoptosis and other signaling pathways may be involved in the development and progression of LGG. Except for HAUS4 and HAUS7, the expression of all genes was positively correlated with immune cell infiltration. High expression of HAUS1, HAUS3, HAUS5, HAUS7, HAUS8 and low expression of HAUS4, HAUS6 in LGG was associated with poor prognosis. The risk models constructed based on the pivotal genes HAUS2, HAUS4 and HAUS8 were validated by nomogram and confirmed to be clinically useful for predicting the prognosis of LGG.

摘要

神经胶质瘤是中枢神经系统最常见的原发性肿瘤。尽管近年来在治疗神经胶质瘤方面取得了一些突破,但生存率仍然较低。尽管 Augmin 家族基因在微管核形成中发挥着关键作用,但它们在神经胶质瘤中的作用尚不清楚。从 UCSC XENA 和 GTEx 中分别提取了低级别神经胶质瘤(LGG)和正常组织的转录组数据。使用 STRING 和 GeneMANIA 数据库建立了与 Augmin 家族基因相关的蛋白质相互作用网络。通过富集分析基因相关功能和通路,探讨了潜在的生物学途径,并通过 TIMER 评估免疫细胞浸润。回归分析和 Kaplan-Meier 分析用于研究 Augmin 家族基因的临床特征及其与神经胶质瘤患者预后的关系。结果表明,除 HAUS7 外,Augmin 家族基因的 mRNA 表达在 LGG 组织中显著升高。免疫调节、细胞周期、凋亡等信号通路可能参与了 LGG 的发生发展。除 HAUS4 和 HAUS7 外,所有基因的表达均与免疫细胞浸润呈正相关。LGG 中 HAUS1、HAUS3、HAUS5、HAUS7、HAUS8 的高表达和 HAUS4、HAUS6 的低表达与预后不良相关。基于关键基因 HAUS2、HAUS4 和 HAUS8 构建的风险模型通过列线图进行验证,并证实对预测 LGG 预后具有临床应用价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54ff/10170088/c56e53ed7846/41598_2023_34779_Fig1_HTML.jpg

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