J Physiol. 2024 Jun;602(11):2383-2394. doi: 10.1113/JP284428. Epub 2023 Jun 21.
Origins research currently rests on a vitalistic foundation and requires reconceptualization. From a cellular perspective, prokaryotic cells grow and divide in stable, colloidal processes, throughout which the cytoplasm remains crowded (concentrated) with closely interacting proteins and nucleic acids. Their functional stability is ensured by repulsive and attractive non-covalent forces, especially van der Waals forces, screened electrostatic forces, and hydrogen bonding (hydration and the hydrophobic effect). On average, biomacromolecules are crowded at above 15% volume fraction, surrounded by up to 3 nm layer of aqueous electrolyte at ionic strength above 0.01 molar; they are energized by biochemical reactions coupled to nutrient environments. During cellular growth, non-covalent molecular forces and biochemical reactions stabilize the cytoplasm as a two-phase, colloidal system comprising vectorially structured cytogel and dilute cytosol. From a geochemical perspective, Earth's rotation kept prebiotic molecules in continuous cyclic disequilibria in Usiglio-type intertidal pools, rich in potassium and magnesium ions, the last cations to precipitate from evaporatig seawater. These ions impart biochemical functionality to extant proteins and RNAs. The prebiotic molecules were repeatedly purified by phase separation in response to tidal drying and rewetting; they were chemically evolving as briny, carbonaceous inclusions in tidal sediments until the crowding transition allowed chemical evolution to proceeed toward Woesian progenotes, the Last Universal Common Ancestors (LUCAs) and the first prokaryotes. These cellular and geochemical processes are summarized as a jigsaw puzzle of the emerging and evolving prokaryotes. Their unavoidable cyclic fusions and rehydrations along Archaean coastlines initiated the emergence of complex Precambrian eukaryotes.
起源研究目前建立在生机论的基础上,需要重新概念化。从细胞的角度来看,原核细胞在稳定的胶体过程中生长和分裂,在此过程中细胞质保持拥挤(浓缩),其中紧密相互作用的蛋白质和核酸。它们的功能稳定性是通过斥力和引力非共价力来保证的,特别是范德华力、屏蔽静电作用力和氢键(水合作用和疏水作用)。平均而言,生物大分子在体积分数高于 15%的情况下被拥挤,周围是离子强度高于 0.01 摩尔的 3nm 厚的水相电解质层;它们通过与营养环境偶联的生化反应而被激活。在细胞生长过程中,非共价分子力和生化反应稳定细胞质作为两相胶体系统,包括有向结构的细胞凝胶和稀细胞质。从地球化学的角度来看,地球的自转使前生物分子在乌西戈型潮间带池塘中保持连续的循环不平衡,这些池塘富含钾和镁离子,是最后从蒸发海水中沉淀出来的阳离子。这些离子赋予现有蛋白质和 RNA 生化功能。前生物分子通过相分离反复得到纯化,以响应潮汐干燥和再润湿;它们在潮汐沉积物中作为咸的、含碳的包裹体进行化学演化,直到拥挤过渡允许化学演化朝着 Woesian 前体、最后的普遍共同祖先(LUCAs)和第一批原核生物进行。这些细胞和地球化学过程被总结为新兴和演化的原核生物的拼图。它们沿着太古代海岸线不可避免的循环融合和再水化,引发了复杂的前寒武纪真核生物的出现。