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基于 3D-QSAR 的新型喹啉衍生物针对结直肠癌活性的分子对接、模拟动态和 ADMET 研究。

3D-QSAR, molecular docking, simulation dynamic and ADMET studies on new quinolines derivatives against colorectal carcinoma activity.

机构信息

Molecular Chemistry and Natural Substances Laboratory, Faculty of Science, University Moulay Ismail, Meknes, Morocco.

School of Biochemistry and Biotechnology, University of the Punjab, Lahore, Pakistan.

出版信息

J Biomol Struct Dyn. 2024 Apr;42(7):3682-3699. doi: 10.1080/07391102.2023.2214233. Epub 2023 May 25.

Abstract

Cancer is the uncontrolled spread of abnormal cells that results in abnormal tissue growth in the affected organ. One of the most important organs is exposed to the growth of colon cancer cells, which start in the large intestine (colon) or the rectum. Several therapeutic protocols were used to treat different kinds of cancer. Recently, several studies have targeted tubulin and microtubules due to their remarkable prefoliation. Also, recent research shows that quinoline compounds have significant efficacy against human colorectal cancer. So, the present work investigated the potential of thirty quinoline compounds as tubulin inhibitors using computational methods. A 3D-QSAR approach using two contours (CoMFA and CoMSIA), molecular docking simulation to determine the binding type of the complexes (ligand-receptor), molecular dynamics simulation and identifying pharmacokinetic characteristics were used to design molecules. For all compounds designed (T1-5), molecular docking was used to compare the stability by type of binding. The ADMET has been utilized for molecules with good stability in molecular docking (T1-3); these compounds have good medicinal characteristics. Furthermore, a molecular dynamics simulation (MD) at 100 ns was performed to confirm the stability of the T1-3 compounds; the molecules (T1-3) remained the most stable throughout the simulation. The compounds T1, T2 and T3 are the best-designed drugs for colorectal carcinoma treatments.Communicated by Ramaswamy H. Sarma.

摘要

癌症是异常细胞的不受控制的扩散,导致受影响器官的异常组织生长。最重要的器官之一是暴露于结肠癌细胞的生长,这些细胞始于大肠(结肠)或直肠。已经使用了几种治疗方案来治疗不同类型的癌症。最近,由于其显著的前叶形成,几项研究针对微管蛋白和微管。此外,最近的研究表明,喹啉类化合物对人结直肠癌具有显著的疗效。因此,本工作使用计算方法研究了三十种喹啉化合物作为微管蛋白抑制剂的潜力。使用两种轮廓(CoMFA 和 CoMSIA)的 3D-QSAR 方法、用于确定复合物(配体-受体)结合类型的分子对接模拟、分子动力学模拟和鉴定药代动力学特性用于设计分子。对于设计的所有化合物(T1-5),使用分子对接来比较通过结合类型的稳定性。ADMET 已用于分子对接中稳定性良好的分子(T1-3);这些化合物具有良好的药用特性。此外,还进行了 100ns 的分子动力学模拟(MD),以确认 T1-3 化合物的稳定性;分子(T1-3)在整个模拟过程中保持最稳定。化合物 T1、T2 和 T3 是治疗结直肠癌的最佳设计药物。由 Ramaswamy H. Sarma 传达。

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