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利用生物信息学工具研究芦笋提取物抗多发性骨髓瘤的作用机制

Mechanism of action of Asparagus officinalis extract against multiple myeloma using bioinformatics tools, and study.

作者信息

Li Yanju, Yang Xu, Wang Feiqing, Zhao Jianing, Zhang Chike, Wu Dan, Yang Bo, Gao Rui, Zhao Peng, Zan Yun, Su Min, He Zhixu, Liu Yang, Wang Jishi, Tang Dongxin

机构信息

Department of Hematology, Affiliated Hospital of Guizhou Medical University, Guiyang, Guizhou, China.

Clinical Medical Research Center, The First Affiliated Hospital of Guizhou University of Traditional Chinese Medicine, Guiyang, Guizhou, China.

出版信息

Front Pharmacol. 2023 May 9;14:1076815. doi: 10.3389/fphar.2023.1076815. eCollection 2023.

Abstract

Asparagus () is a perennial flowering plant species. Its main components have tumor-prevention, immune system-enhancement, and anti-inflammation effects. Network pharmacology is a powerful approach that is being applied increasingly to research of herbal medicines. Herb identification, study of compound targets, network construction, and network analysis have been used to elucidate how herbal medicines work. However, the interaction of bioactive substances from asparagus with the targets involved in multiple myeloma (MM) has not been elucidated. We explored the mechanism of action of asparagus in MM through network pharmacology and experimental verification. The active ingredients and corresponding targets of asparagus were acquired from the Traditional Chinese Medicine System Pharmacology database, followed by identification of MM-related target genes using GeneCards and Online Mendelian Inheritance in Man databases, which were matched with the potential targets of asparagus. Potential targets were identified and a target network of traditional Chinese medicine was constructed. The STRING database and Cytoscape were utilized to create protein-protein interaction (PPI) networks and further screening of core targets. The intersection of target genes and core target genes of the phosphoinositide 3-kinase/protein kinase B (PI3K/AKT) pathway was enriched, the top-five core target genes were selected, and the binding affinity of corresponding compounds to the top-five core targets was analyzed using molecular docking. Network pharmacology identified nine active components of asparagus from databases based on oral bioavailability and drug similarity, and predicted 157 potential targets related to asparagus. Enrichment analyses showed that "steroid receptor activity" and the "PI3K/AKT signaling pathway" were the most enriched biological process and signaling pathway, respectively. According to the top-10 core genes and targets of the PPI pathway, AKT1, interleukin (IL)-6, vascular endothelial growth factor (VEGF)A, MYC, and epidermal growth factor receptor (EGFR) were selected for molecular docking. The latter showed that five core targets of the PI3K/AKT signaling pathway could bind to quercetin, among which EGFR, IL-6, and MYC showed strong docking, and the diosgenin ligand could bind to VEGFA. Cell experiments showed that asparagus, through the PI3K/AKT/NF-κB pathway, inhibited the proliferation and migration of MM cells, and caused retardation and apoptosis of MM cells in the G0/G1 phase. In this study, the anti-cancer activity of asparagus against MM was demonstrated using network pharmacology, and potential pharmacological mechanisms were inferred using experimental data.

摘要

芦笋()是一种多年生开花植物。其主要成分具有预防肿瘤、增强免疫系统和抗炎作用。网络药理学是一种强大的方法,越来越多地应用于草药研究。草药鉴定、化合物靶点研究、网络构建和网络分析已被用于阐明草药的作用机制。然而,芦笋中的生物活性物质与多发性骨髓瘤(MM)相关靶点的相互作用尚未阐明。我们通过网络药理学和实验验证探索了芦笋在MM中的作用机制。从中药系统药理学数据库中获取芦笋的活性成分和相应靶点,随后使用GeneCards和人类孟德尔遗传在线数据库鉴定MM相关靶基因,并与芦笋的潜在靶点进行匹配。确定潜在靶点并构建中药靶点网络。利用STRING数据库和Cytoscape创建蛋白质-蛋白质相互作用(PPI)网络并进一步筛选核心靶点。对磷酸肌醇3激酶/蛋白激酶B(PI3K/AKT)通路的靶基因和核心靶基因的交集进行富集,选择前五个核心靶基因,并使用分子对接分析相应化合物与前五个核心靶点的结合亲和力。网络药理学基于口服生物利用度和药物相似性从数据库中鉴定出芦笋的九种活性成分,并预测了157个与芦笋相关的潜在靶点。富集分析表明,“类固醇受体活性”和“PI3K/AKT信号通路”分别是最富集的生物学过程和信号通路。根据PPI通路的前10个核心基因和靶点,选择AKT1、白细胞介素(IL)-6、血管内皮生长因子(VEGF)A、MYC和表皮生长因子受体(EGFR)进行分子对接。后者表明PI3K/AKT信号通路的五个核心靶点可与槲皮素结合,其中EGFR、IL-6和MYC表现出强烈的对接,薯蓣皂苷元配体可与VEGFA结合。细胞实验表明,芦笋通过PI3K/AKT/NF-κB通路抑制MM细胞的增殖和迁移,并导致MM细胞在G0/G1期阻滞和凋亡。在本研究中,利用网络药理学证明了芦笋对MM的抗癌活性,并利用实验数据推断了潜在的药理机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e8cb/10203399/a24fa1318433/fphar-14-1076815-g001.jpg

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