College of Life Sciences, Zhejiang Normal University, Jinhua 321004, China.
Hubei Provincial Key Laboratory for Protection and Application of Special Plant Germplasm in Wuling Area of China, College of Life Sciences, South-Central Minzu University, Wuhan 430074, China.
Genes (Basel). 2023 Apr 26;14(5):979. doi: 10.3390/genes14050979.
L. 1753 (Asteraceae), also called safflower, is a cash crop with both edible and medical properties. We analyzed and reported the safflower mitogenome based on combined short and long reads obtained from Illumina and Pacbio platforms, respectively. This safflower mitogenome mainly contained two circular chromosomes, with a total length of 321,872 bp, and encoded 55 unique genes, including 34 protein-coding genes (PCGs), 3 rRNA genes, and 18 tRNA genes. The total length of repeat sequences greater than 30 bp was 24,953 bp, accounting for 7.75% of the whole mitogenome. Furthermore, we characterized the RNA editing sites of protein-coding genes located in the safflower mitogenome, and the total number of RNA editing sites was 504. Then, we revealed partial sequence transfer events between plastid and mitochondria, in which one plastid-derived gene () remained intact in the mitogenome. Despite extensive arrangement events among the three mitogenomes of , , and , the constructed phylogenetic tree based on mitogenome PCGs showed that has a closer relationship with three Cardueae species, , , and , which is similar to the phylogeny constructed from the PCGs of plastid genomes. This mitogenome not only enriches the genetic information of safflower but also will be useful in the phylogeny and evolution study of the Asteraceae.
L. 1753(菊科),又称红花,是一种兼具食用和药用价值的经济作物。我们分别基于 Illumina 和 Pacbio 平台获得的短读长和长读长数据,对红花的线粒体基因组进行了分析和报道。该红花线粒体基因组主要包含两条环状染色体,总长 321872bp,共编码 55 个独特基因,包括 34 个蛋白编码基因(PCGs)、3 个 rRNA 基因和 18 个 tRNA 基因。大于 30bp 的重复序列总长度为 24953bp,占整个线粒体基因组的 7.75%。此外,我们对红花线粒体基因组中位于蛋白编码基因内的 RNA 编辑位点进行了特征分析,发现共存在 504 个 RNA 编辑位点。然后,我们揭示了质体和线粒体之间的部分序列转移事件,其中一个质体衍生基因()在线粒体基因组中保持完整。尽管 、和 三个线粒体基因组之间存在广泛的排列事件,但基于线粒体 PCGs 构建的系统发育树显示,与三个 Cardueae 物种、、和具有更近的亲缘关系,这与基于质体基因组 PCGs 构建的系统发育树相似。该线粒体基因组不仅丰富了红花的遗传信息,而且对菊科的系统发育和进化研究也具有重要意义。