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长链非编码 RNA TRHDE-AS1 与脑胶质瘤的基因组景观和临床结局相关。

lncRNA TRHDE-AS1 Correlated with Genomic Landscape and Clinical Outcome in Glioma.

机构信息

School of Public Health, Capital Medical University, Beijing 100069, China.

National Institute for Data Science in Health and Medicine, Capital Medical University, Beijing 100069, China.

出版信息

Genes (Basel). 2023 May 8;14(5):1052. doi: 10.3390/genes14051052.

Abstract

The role of lncRNA in cancer development has received more and more attention in research. A variety of lncRNAs are associated with the occurrence and development of glioma. However, the role of TRHDE-AS1 in glioma is still unknown. In this study, we explored the role of TRHDE-AS1 in glioma through bioinformatic methods. We first identified an association between TRHDE-AS1 and tumor prognosis in pan-cancer analysis. Subsequently, the expression levels of TRHDE-AS1 in various clinical types of glioma were compared, and significant differences were found in pathological classification, WHO classification, molecular classification, IDH mutation, and age stratification. We analyzed the genes co-expressed with TRHDE-AS1 in glioma. In the functional analysis of TRHDE-AS1, we found that TRHDE-AS1 may be involved in the regulation of synapse-related functions. In glioma cancer driver gene correlation analysis, it was also found that TRHDE-AS1 was significantly correlated with the expression levels of multiple driver genes such as TP53, BRAF, and IDH1. By comparing the mutant profiles of the high and low TRHDE-AS1 groups, we also found that there may be differences in TP53 and CIC gene mutations in low-grade gliomas. Subsequent correlation analysis between TRHDE-AS1 and glioma immune microenvironment showed that the expression level of TRHDE-AS1 was correlated with a variety of immune cells. Therefore, we believe that TRHDE-AS1 is involved in the occurrence and development of glioma and has the ability to predict the prognosis of glioma as a biomarker of glioma.

摘要

长链非编码 RNA(lncRNA)在癌症发展中的作用在研究中越来越受到关注。多种 lncRNA 与脑胶质瘤的发生和发展有关。然而,TRHDE-AS1 在脑胶质瘤中的作用尚不清楚。在本研究中,我们通过生物信息学方法探讨了 TRHDE-AS1 在脑胶质瘤中的作用。我们首先在泛癌症分析中确定了 TRHDE-AS1 与肿瘤预后之间的关联。随后,比较了各种临床类型脑胶质瘤中 TRHDE-AS1 的表达水平,在病理分级、世界卫生组织分级、分子分级、IDH 突变和年龄分层中发现了显著差异。我们分析了与 TRHDE-AS1 在脑胶质瘤中共表达的基因。在 TRHDE-AS1 的功能分析中,我们发现 TRHDE-AS1 可能参与调节突触相关功能。在脑胶质瘤癌症驱动基因相关性分析中,还发现 TRHDE-AS1 与 TP53、BRAF 和 IDH1 等多个驱动基因的表达水平显著相关。通过比较高低 TRHDE-AS1 组的突变谱,我们还发现低级别脑胶质瘤中 TP53 和 CIC 基因的突变可能存在差异。随后,TRHDE-AS1 与脑胶质瘤免疫微环境的相关性分析表明,TRHDE-AS1 的表达水平与多种免疫细胞相关。因此,我们认为 TRHDE-AS1 参与脑胶质瘤的发生和发展,并具有作为脑胶质瘤生物标志物预测脑胶质瘤预后的能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/98a3/10217926/859299ae0126/genes-14-01052-g001.jpg

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