Peters Eike E, Cahn Jackson K B, Lotti Alessandro, Gavriilidou Asimenia, Steffens Ursula A E, Loureiro Catarina, Schorn Michelle A, Cárdenas Paco, Vickneswaran Nilani, Crews Phillip, Sipkema Detmer, Piel Jörn
Institute of Microbiology, Eidgenössische Technische Hochschule (ETH) Zürich, Vladimir-Prelog-Weg 4, 8093, Zürich, Switzerland.
Laboratory of Microbiology, Wageningen University and Research, 6708 WE, Wageningen, The Netherlands.
ISME Commun. 2023 May 29;3(1):50. doi: 10.1038/s43705-023-00259-z.
Genomic and functional analyses of bacterial sponge symbionts belonging to the uncultivated candidate genus 'Entotheonella' has revealed them as the prolific producers of bioactive compounds previously identified from their invertebrate hosts. These studies also suggested 'Entotheonella' as the first members of a new candidate phylum, 'Tectomicrobia'. Here we analyzed the phylogenetic structure and environmental distribution of this as-yet sparsely populated phylum-like lineage. The data show that 'Entotheonella' and other 'Tectomicrobia' are not restricted to marine habitats but widely distributed among terrestrial locations. The inferred phylogenetic trees suggest several intra-phylum lineages with diverse lifestyles. Of these, the previously described 'Entotheonella' lineage can be more accurately divided into at least three different candidate genera with the terrestrial 'Candidatus Prasianella', the largely terrestrial 'Candidatus Allonella', the 'Candidatus Thalassonella' comprising sponge-associated members, and the more widely distributed 'Candidatus Entotheonella'. Genomic characterization of 'Thalassonella' members from a range of sponge hosts did not suggest a role as providers of natural products, despite high genomic similarity to 'Entotheonella' regarding primary metabolism and implied lifestyle. In contrast, the analysis revealed a correlation between the revised 'Entotheonella' 16S rRNA gene phylogeny and a specific association with sponges and their natural products. This feature might serve as a discovery method to accelerate the identification of new chemically rich 'Entotheonella' variants, and led to the identification of the first 'Entotheonella' symbiont in a non-tetractinellid sponge, Psammocinia sp., indicating a wide host distribution of 'Entotheonella'-based chemical symbiosis.
对属于未培养候选属“Entotheonella”的细菌海绵共生体进行的基因组和功能分析表明,它们是先前从其无脊椎动物宿主中鉴定出的生物活性化合物的多产生产者。这些研究还表明“Entotheonella”是新候选门“Tectomicrobia”的首批成员。在此,我们分析了这个迄今种群稀少的类门谱系的系统发育结构和环境分布。数据显示,“Entotheonella”和其他“Tectomicrobia”并不局限于海洋栖息地,而是广泛分布于陆地环境。推断的系统发育树表明该门内有几个具有不同生活方式的谱系。其中,先前描述的“Entotheonella”谱系可更准确地分为至少三个不同的候选属,即陆地的“候选普拉西亚内拉属(Candidatus Prasianella)”、主要生活在陆地的“候选阿洛内拉属(Candidatus Allonella)”、包含与海绵相关成员的“候选海生内拉属(Candidatus Thalassonella)”以及分布更广泛的“候选Entotheonella属”。对来自一系列海绵宿主的“海生内拉属”成员进行的基因组特征分析并未表明它们在提供天然产物方面发挥作用,尽管在初级代谢和隐含生活方式方面与“Entotheonella”具有高度的基因组相似性。相比之下,分析揭示了修订后的“Entotheonella”16S rRNA基因系统发育与与海绵及其天然产物的特定关联之间的相关性。这一特征可能作为一种发现方法,加速鉴定新的富含化学物质的“Entotheonella”变体,并导致在非四放海绵纲海绵Psammocinia sp.中鉴定出首个“Entotheonella”共生体,表明基于“Entotheonella”的化学共生在宿主中的广泛分布。