Radboud Institute of Biological and Environmental Sciences, Microbiology Cluster, Radboud University, Nijmegen, Netherlands.
Soehngen Institute of Anaerobic Microbiology, Nijmegen, Netherlands.
Appl Environ Microbiol. 2023 Jun 28;89(6):e0036723. doi: 10.1128/aem.00367-23. Epub 2023 Jun 5.
Acetyl-CoA synthetase (ACS) and acetate ligase (ACD) are widespread among microorganisms, including archaea, and play an important role in their carbon metabolism, although only a few of these enzymes have been characterized. Anaerobic methanotrophs (ANMEs) have been reported to convert methane anaerobically into CO, polyhydroxyalkanoate, and acetate. Furthermore, it has been suggested that they might be able to use acetate for anabolism or aceticlastic methanogenesis. To better understand the potential acetate metabolism of ANMEs, we characterized an ACS from ANME-2a as well as an ACS and an ACD from ANME-2d. The conversion of acetate into acetyl-CoA ( of 8.4 μmol mg min and of 0.7 mM acetate) by the monomeric 73.8-kDa ACS enzyme from ANME-2a was more favorable than the formation of acetate from acetyl-CoA ( of 0.4 μmol mg min and of 0.2 mM acetyl-CoA). The monomeric 73.4-kDa ACS enzyme from ANME-2d had similar values for both directions ( of 0.9 μmol mg min versus of 0.3 μmol mg min). The heterotetrameric ACD enzyme from ANME-2d was active solely in the acetate-producing direction. Batch incubations of an enrichment culture dominated by ANME-2d fed with C-labeled acetate produced 3 μmol of [C]methane in 7 days, suggesting that this anaerobic methanotroph might have the potential to reverse its metabolism and perform aceticlastic methanogenesis using ACS to activate acetate albeit at low rates (2 nmol g [dry weight] min). Together, these results show that ANMEs may have the potential to use acetate for assimilation as well as to use part of the surplus acetate for methane production. Acetyl-CoA plays a key role in carbon metabolism and is found at the junction of many anabolic and catabolic reactions. This work describes the biochemical properties of ACS and ACD enzymes from ANME-2 archaea. This adds to our knowledge of archaeal ACS and ACD enzymes, only a few of which have been characterized to date. Furthermore, we validated the activity of ACS in ANME-2d, showing the conversion of acetate into methane by an enrichment culture dominated by ANME-2d.
乙酰辅酶 A 合成酶 (ACS) 和乙酸连接酶 (ACD) 在微生物中广泛存在,包括古菌,它们在微生物的碳代谢中发挥着重要作用,尽管这些酶只有少数被鉴定出来。已经报道了厌氧甲烷营养菌 (ANME) 能够将甲烷厌氧转化为 CO、多羟基烷酸酯和乙酸。此外,有人认为它们可能能够利用乙酸进行同化或乙酸裂解产甲烷。为了更好地理解 ANME 的潜在乙酸代谢,我们对 ANME-2a 的 ACS 以及 ANME-2d 的 ACS 和 ACD 进行了表征。单体 73.8 kDa 的 ACS 酶将乙酸转化为乙酰辅酶 A(8.4 μmol mg−1 min−1,0.7 mM 乙酸)的转化率高于乙酰辅酶 A 生成乙酸的转化率(0.4 μmol mg−1 min−1,0.2 mM 乙酰辅酶 A)。来自 ANME-2d 的单体 73.4 kDa 的 ACS 酶在两个方向上都具有相似的值(0.9 μmol mg−1 min−1对 0.3 μmol mg−1 min−1)。来自 ANME-2d 的异四聚体 ACD 酶仅在产生乙酸的方向上具有活性。用 C 标记的乙酸喂养的以 ANME-2d 为主的富集培养物的分批孵育在 7 天内产生了 3 μmol [C]甲烷,这表明这种厌氧甲烷营养菌可能有潜力通过 ACS 来激活乙酸,从而逆转其代谢并进行乙酸裂解产甲烷,尽管速率较低(2 nmol g [干重] min)。总之,这些结果表明,ANME 可能有潜力将乙酸用于同化,以及将部分多余的乙酸用于甲烷生产。乙酰辅酶 A 在碳代谢中起着关键作用,存在于许多合成代谢和分解代谢反应的交汇点。本工作描述了来自 ANME-2 古菌的 ACS 和 ACD 酶的生化特性。这增加了我们对古菌 ACS 和 ACD 酶的认识,迄今为止只有少数几种被鉴定出来。此外,我们验证了 ANME-2d 中的 ACS 活性,通过以 ANME-2d 为主的富集培养物将乙酸转化为甲烷。