从日本琵琶湖沉积物中分离出的新型产氢一氧化碳氧化菌——阿尔廷苏斯嗜热长杆菌B1-1菌株的基因组序列草图
Draft Genome Sequence of Thermolongibacillus altinsuensis Strain B1-1, a Novel Hydrogenogenic CO Oxidizer Isolated from Sediment from Lake Biwa in Japan.
作者信息
Suzuki Jota, Imaura Yoshinari, Nishida Shiho, Kamikawa Ryoma, Yoshida Takashi
机构信息
Laboratory of Marine Microbiology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
出版信息
Microbiol Resour Announc. 2023 Jul 18;12(7):e0033423. doi: 10.1128/mra.00334-23. Epub 2023 Jun 5.
Abstract
A facultative anaerobic, thermophilic, hydrogenogenic CO-oxidizing bacterial strain, B1-1, was isolated from a sediment sample from Lake Biwa, a freshwater lake in Japan. B1-1, which is a novel strain of Thermolongibacillus altinsuensis, is capable of hydrogenogenic CO oxidation. Here, we report the draft genome sequence of B1-1 (2.92 Mbp, with a GC content of 41.3%).
摘要
从日本淡水湖琵琶湖的沉积物样本中分离出一株兼性厌氧、嗜热、产氢的一氧化碳氧化细菌菌株B1-1。B1-1是嗜热长芽孢杆菌（Thermolongibacillus altinsuensis）的一个新菌株，能够进行产氢一氧化碳氧化。在此，我们报告B1-1的基因组草图序列（2.92 Mbp，GC含量为41.3%）。
相似文献
1
Draft Genome Sequence of Thermolongibacillus altinsuensis Strain B1-1, a Novel Hydrogenogenic CO Oxidizer Isolated from Sediment from Lake Biwa in Japan.从日本琵琶湖沉积物中分离出的新型产氢一氧化碳氧化菌——阿尔廷苏斯嗜热长杆菌B1-1菌株的基因组序列草图
Microbiol Resour Announc. 2023 Jul 18;12(7):e0033423. doi: 10.1128/mra.00334-23. Epub 2023 Jun 5.
2
Thermolongibacillus altinsuensis gen. nov., sp. nov. and Thermolongibacillus kozakliensis sp. nov., aerobic, thermophilic, long bacilli isolated from hot springs.热咸单胞菌属，新属，和热科扎基利斯单胞菌，新种，好氧，嗜热，长杆菌，从温泉中分离得到。
Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):187-197. doi: 10.1099/ijs.0.053280-0. Epub 2013 Sep 18.
3
Draft genome of a member of hydrogenogenic carbon monoxide utilizers, isolated from a freshwater lake sediment.从淡水湖沉积物中分离出的产氢一氧化碳利用菌成员的基因组草图。
Microbiol Resour Announc. 2024 Feb 15;13(2):e0079523. doi: 10.1128/mra.00795-23. Epub 2024 Jan 17.
4
High-quality draft genome sequence of strain skLN1, facultative anaerobic spore-former isolated from freshwater lake sediment.从淡水湖沉积物中分离出的兼性厌氧芽孢形成菌株skLN1的高质量基因组草图序列。
Stand Genomic Sci. 2017 Dec 13;12:76. doi: 10.1186/s40793-017-0302-y. eCollection 2017.
5
Morphological and phylogenetic characterizations of freshwater Thioploca species from Lake Biwa, Japan, and Lake Constance, Germany.来自日本琵琶湖和德国康斯坦茨湖的淡水辫硫菌属物种的形态学和系统发育特征
Appl Environ Microbiol. 2003 Jan;69(1):390-8. doi: 10.1128/AEM.69.1.390-398.2003.
6
Complete Genome Sequence of Pseudomonas otitidis Strain MrB4, Isolated from Lake Biwa in Japan.从日本琵琶湖分离出的耳炎假单胞菌菌株MrB4的全基因组序列
Microbiol Resour Announc. 2020 Apr 16;9(16):e00148-20. doi: 10.1128/MRA.00148-20.
7
Distribution of putative denitrifying methane oxidizing bacteria in sediment of a freshwater lake, Lake Biwa.淡水湖泊琵琶湖沉积物中疑似反硝化甲烷氧化菌的分布。
Syst Appl Microbiol. 2012 Jun;35(4):233-8. doi: 10.1016/j.syapm.2012.03.005. Epub 2012 Apr 13.
8
Draft Genome Sequences of Two Hydrogenogenic Carboxydotrophic Bacteria, sp. Strains JDF658 and ULO1, Isolated from Two Distinct Volcanic Fronts in Japan.从日本两个不同火山前沿分离出的两种产氢羧营养细菌菌株JDF658和ULO1的基因组序列草图
Genome Announc. 2017 Apr 20;5(16):e00242-17. doi: 10.1128/genomeA.00242-17.
9
Draft Genome Sequences of DSM 30849, Isolated from a Cleanroom for Spacecraft Assembly, and sp. Strain Bi-70, Isolated from a Freshwater Lake.从航天器组装洁净室分离出的DSM 30849及从淡水湖分离出的sp.菌株Bi-70的基因组序列草图
Genome Announc. 2017 Mar 30;5(13):e00079-17. doi: 10.1128/genomeA.00079-17.
10
Thermincola carboxydiphila gen. nov., sp. nov., a novel anaerobic, carboxydotrophic, hydrogenogenic bacterium from a hot spring of the Lake Baikal area.嗜羧热栖菌属，新属，新种，一种来自贝加尔湖地区温泉的新型厌氧、羧基营养、产氢细菌。
Int J Syst Evol Microbiol. 2005 Sep;55(Pt 5):2069-2073. doi: 10.1099/ijs.0.63299-0.
本文引用的文献
1
Genetic Engineering of Carbon Monoxide-dependent Hydrogen-producing Machinery in Parageobacillus thermoglucosidasius.产热解糖梭菌中一氧化碳依赖型产氢机器的遗传工程。
Microbes Environ. 2020;35(4). doi: 10.1264/jsme2.ME20101.
2
Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases.厌氧一氧化碳脱氢酶的结构与系统发育多样性
Front Microbiol. 2019 Jan 17;9:3353. doi: 10.3389/fmicb.2018.03353. eCollection 2018.
3
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes.关于将基因组数据用于原核生物分类学的拟议最低标准。
Int J Syst Evol Microbiol. 2018 Jan;68(1):461-466. doi: 10.1099/ijsem.0.002516.
4
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.DFAST：一个灵活的原核生物基因组注释管道，用于更快地发布基因组。
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
5
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.JSpeciesWS：一个基于成对基因组比较进行原核生物物种界定的网络服务器。
Bioinformatics. 2016 Mar 15;32(6):929-31. doi: 10.1093/bioinformatics/btv681. Epub 2015 Nov 16.
6
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
7
Thermolongibacillus altinsuensis gen. nov., sp. nov. and Thermolongibacillus kozakliensis sp. nov., aerobic, thermophilic, long bacilli isolated from hot springs.热咸单胞菌属，新属，和热科扎基利斯单胞菌，新种，好氧，嗜热，长杆菌，从温泉中分离得到。
Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):187-197. doi: 10.1099/ijs.0.053280-0. Epub 2013 Sep 18.
8
A thermophilic, hydrogenogenic and carboxydotrophic bacterium, Calderihabitans maritimus gen. nov., sp. nov., from a marine sediment core of an undersea caldera.一种嗜热、产氢和产碳的细菌，即海洋海底火山口沉积物中的海洋栖居的 Calderihabitans maritimus 属新种，新种。
Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3602-3608. doi: 10.1099/ijs.0.050468-0. Epub 2013 Apr 19.
9
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
10
[Molecular analysis of microbial diversity in the Zavarzin Spring, the Uzon caldera ].[乌宗火山口扎瓦尔津温泉微生物多样性的分子分析]
Mikrobiologiia. 2011 Mar-Apr;80(2):258-65.
Zotero 插件