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一种ceRNA网络介导的铜死亡相关基因SLC31A1过表达与乳腺癌预后不良和免疫浸润阳性相关。

A ceRNA network-mediated over-expression of cuproptosis-related gene SLC31A1 correlates with poor prognosis and positive immune infiltration in breast cancer.

作者信息

Lian Weibin, Yang Peidong, Li Liangqiang, Chen Debo, Wang Chuan

机构信息

Department of Breast Surgery, Quanzhou First Hospital Affiliated to Fujian Medical University, Quanzhou, Fujian, China.

Department of Breast Surgery, Fujian Medical University Union Hospital, Fuzhou, Fujian, China.

出版信息

Front Med (Lausanne). 2023 May 18;10:1194046. doi: 10.3389/fmed.2023.1194046. eCollection 2023.

Abstract

INTRODUCTION

Solute carrier family 31 member 1(SLC31A1) has been reported as the copper importer, and was identified to be involved in the process of "cuproptosis". However, the mechanism of SLC31A1 in breast cancer remains unclear.

METHODS

We examined the expression of SLC31A1 mRNA in breast cancer tissues and cell lines using Real-time PCR. The data for this study were obtained from The Cancer Genome Atlas (TCGA) database and analyzed via R 3.6.3. TIMER, UALCAN, GEPIA2, STRING, Metascape, Kaplan-Meier Plotter, starBase and miRNet websites were used for a comprehensive analysis of SLC31A1.

RESULTS

Our study suggested that SLC31A1 mRNA was over-expressed in breast tumor tissue and breast cancer cell lines, and which was closely related to poor relapse-free survival (RFS) and distant metastasis-free survival (DMFS). In addition, we constructed a co-expression network of SLC31A1. Functional enrichment analysis indicated that they were mainly involved in copper ion transport. Interestingly, SLC31A1 expression was positively associated with all m6A-related genes, especially with YTHDF3 ( = 0.479). Importantly, the LINC00511/miR-29c-3p/SLC31A1 axis was identified as the most potential pathway promoting breast cancer progress by affecting copper transport. Furthermore, the expression level of SLC31A1 in breast cancer was positively correlated with tumor immune cell infiltration, immune cell biomarkers and cancer-associated fibroblast (CAF).

CONCLUSION

Up-regulation of SLC31A1 expression and regulation of copper ion transport mediated by LINC00511-miR-29-3p axis is related to poor prognosis and positively correlated with tumor immune infiltration in breast cancer.

摘要

引言

溶质载体家族31成员1(SLC31A1)已被报道为铜离子导入蛋白,并被确定参与“铜死亡”过程。然而,SLC31A1在乳腺癌中的作用机制仍不清楚。

方法

我们使用实时定量PCR检测了乳腺癌组织和细胞系中SLC31A1 mRNA的表达。本研究的数据来自癌症基因组图谱(TCGA)数据库,并通过R 3.6.3进行分析。利用TIMER、UALCAN、GEPIA2、STRING、Metascape、Kaplan-Meier Plotter、starBase和miRNet网站对SLC31A1进行综合分析。

结果

我们的研究表明,SLC31A1 mRNA在乳腺肿瘤组织和乳腺癌细胞系中高表达,且与无复发生存期(RFS)和无远处转移生存期(DMFS)差密切相关。此外,我们构建了SLC31A1的共表达网络。功能富集分析表明,它们主要参与铜离子转运。有趣的是,SLC31A1的表达与所有m6A相关基因呈正相关,尤其是与YTHDF3(r = 0.479)。重要的是,LINC00511/miR-29c-3p/SLC31A1轴被确定为通过影响铜转运促进乳腺癌进展的最具潜力的途径。此外,SLC31A1在乳腺癌中的表达水平与肿瘤免疫细胞浸润、免疫细胞生物标志物和癌症相关成纤维细胞(CAF)呈正相关。

结论

SLC31A1表达上调以及LINC00511-miR-29-3p轴介导的铜离子转运调节与乳腺癌预后不良相关,并与肿瘤免疫浸润呈正相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9846/10234574/02e07a1e21a0/fmed-10-1194046-g001.jpg

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